View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_17 (Length: 259)
Name: NF0798_low_17
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_17 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 33637303 - 33637557
Alignment:
| Q |
5 |
tccaacaatataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaac |
104 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637303 |
tccaacaaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaac |
33637402 |
T |
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| Q |
105 |
agttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatat |
204 |
Q |
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| T |
33637403 |
aattgttgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatat |
33637502 |
T |
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| Q |
205 |
gttcagctttatcatctctcctattatacataataatatcatcaaaagctccttt |
259 |
Q |
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| T |
33637503 |
gttcagctctatcatctctcctattatacatactaatatcatcaaaagctccttt |
33637557 |
T |
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Target: scaffold0267 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 13800 - 13615
Alignment:
| Q |
5 |
tccaacaatataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaa |
103 |
Q |
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| T |
13800 |
tccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaa |
13701 |
T |
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| Q |
104 |
cagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
189 |
Q |
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| T |
13700 |
catttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt |
13615 |
T |
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 3838304 - 3838134
Alignment:
| Q |
20 |
aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga |
118 |
Q |
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|||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| |||||||||||||||| ||| |||||||||||||||||| |
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| T |
3838304 |
aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaacagttgttgcatacg |
3838205 |
T |
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| Q |
119 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
189 |
Q |
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| T |
3838204 |
agattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt |
3838134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
111 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
210 |
Q |
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| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
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| Q |
211 |
ctttatcatctctcctattatacataata |
239 |
Q |
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| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 29126833 - 29126661
Alignment:
| Q |
8 |
aacaatataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacag |
106 |
Q |
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||||| ||||| ||||||| || |||||||||||||||||| | |||||| ||||||| |||||||| || ||| || ||| |||| | |||| | |
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| T |
29126833 |
aacaaaataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattg |
29126734 |
T |
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| Q |
107 |
ttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
180 |
Q |
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| T |
29126733 |
ttgttgcatagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 13784126 - 13784247
Alignment:
| Q |
119 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatca |
218 |
Q |
| |
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||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || || | |||| || ||||| |
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| T |
13784126 |
agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatca |
13784225 |
T |
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| Q |
219 |
tctctcctattatacataataa |
240 |
Q |
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||||||| |||||||||||||| |
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| T |
13784226 |
tctctccgattatacataataa |
13784247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
114 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
213 |
Q |
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|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
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| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
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| Q |
214 |
tatcatctctcctattatacataataa |
240 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
| Q |
32 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg |
130 |
Q |
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||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| ||| |
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| T |
20475663 |
gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg |
20475762 |
T |
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| Q |
131 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
174 |
Q |
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| |||| | |||||||||||||||| |||||| |||| ||||| |
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| T |
20475763 |
acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
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