View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_18 (Length: 256)
Name: NF0798_low_18
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_18 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33637794 - 33638020
Alignment:
| Q |
1 |
caacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637794 |
caacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttata |
33637893 |
T |
|
| Q |
101 |
catatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637894 |
catatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacgaattgtccaacgagagtgcctccaagtagaattggaaaatcagggcaa |
33637993 |
T |
|
| Q |
201 |
gcaatagtctttctccaacaactatct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
33637994 |
gcaatagtctttctccaacaactatct |
33638020 |
T |
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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 29124786 - 29124568
Alignment:
| Q |
5 |
aaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacata |
104 |
Q |
| |
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|||||||| || |||| |||||||||||| ||||||| ||||||||||| |||||||| | ||| || | || ||||||||||| ||| || |||| |
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| T |
29124786 |
aaaaccattagacaacaacatatacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttcaattcattcata |
29124687 |
T |
|
| Q |
105 |
tgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaa |
204 |
Q |
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|||||||||| | | |||||||||||| | |||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
29124686 |
tgacaatttaagctatgacgtgctaactagttaatactaccattcacgaatggtccaacaagagtgccttttggtagaattggaaaatcagggcaagcaa |
29124587 |
T |
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| Q |
205 |
tagtctttctccaacaact |
223 |
Q |
| |
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|||||||||||||||||| |
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| T |
29124586 |
gagtctttctccaacaact |
29124568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 31669618 - 31669440
Alignment:
| Q |
47 |
catatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacca |
146 |
Q |
| |
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|||||||| ||||||||| ||||| |||| || | ||||||||| ||| || |||||| |||||| | | ||| |||||||| | |||| ||||||| |
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| T |
31669618 |
catatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatactacca |
31669519 |
T |
|
| Q |
147 |
ttcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactat |
225 |
Q |
| |
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|||||| |||||||||| | || | || |||| ||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
31669518 |
ttcacgaatggtccaacaaaagcgtcttttagtaaaattggaaaatcagggcaagcaaaagtctttctccaacatctat |
31669440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 40794307 - 40794392
Alignment:
| Q |
60 |
aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacc |
145 |
Q |
| |
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|||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |||||||| | ||||||||||| |
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| T |
40794307 |
aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactacc |
40794392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 3837810 - 3837608
Alignment:
| Q |
24 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
123 |
Q |
| |
|
||||||||||| |||||| | |||| ||||| ||| ||||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||| ||| |
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| T |
3837810 |
atatacttacatgcctcctttcgcaaatcaagcgaaaaaatcaataactggttgatggtaacattttccctttcatacaaatgacaatttaagttatgat |
3837711 |
T |
|
| Q |
124 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
223 |
Q |
| |
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| |||||| |||||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| |||| |
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| T |
3837710 |
acgttaaccagttaacactaccattcacgaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact |
3837611 |
T |
|
| Q |
224 |
atc |
226 |
Q |
| |
|
||| |
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| T |
3837610 |
atc |
3837608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 13291 - 13089
Alignment:
| Q |
24 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
123 |
Q |
| |
|
||||||||||| | |||| | |||| ||||| ||| ||||||| ||| ||||| ||||||||||||| || || ||||| ||||||||||| ||| ||| |
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| T |
13291 |
atatacttacatgtctcctttcgcaaatcaagcgaaaaaatcaataactggttaatggtaacattttccctttcatacaaatgacaatttaagttatgat |
13192 |
T |
|
| Q |
124 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
223 |
Q |
| |
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| |||||| |||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| |||| |
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| T |
13191 |
acgttaaccagttaacactaccattcagaaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact |
13092 |
T |
|
| Q |
224 |
atc |
226 |
Q |
| |
|
||| |
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|
| T |
13091 |
atc |
13089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 13784509 - 13784728
Alignment:
| Q |
4 |
caaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacat |
103 |
Q |
| |
|
||||||||||||| | || ||||||||||| |||| |||||| ||||| || |||| ||||||||| | ||| |||| ||||| ||||||||| |
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|
| T |
13784509 |
caaaaccatcaggcagcaaaatatacttacatttctccttccgcagatcaagtgaaaaaaccactaattgttggatagtaatattttcccatttataatc |
13784608 |
T |
|
| Q |
104 |
atgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagca |
203 |
Q |
| |
|
|| || |||| ||||||| |||||||||| |||||||||||||||||| |||||||| | ||| || ||||||||||||||| ||||||| | |
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|
| T |
13784609 |
atcactgtttaagttgtgaagtgctaaccagttaacactaccattcacgaatggtccattggaagt---tcgtagtagaattggaaaagtagggcaatcg |
13784705 |
T |
|
| Q |
204 |
atagtctttctccaacaactatc |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13784706 |
atagtctttctccaacaactatc |
13784728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 34192 - 34391
Alignment:
| Q |
24 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
123 |
Q |
| |
|
||||||||||| | |||| |||||| ||||| || |||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |
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|
| T |
34192 |
atatacttacatgtctccttccgcagatcaagtgaaaaaaccactaattgttggatggtaacattttcccatttataatcatcactgtttaagttgtgaa |
34291 |
T |
|
| Q |
124 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
223 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||| | | | || ||||||||||||||| ||||||| | | |||||||||||||||||| |
|
|
| T |
34292 |
gtgctaaccagttaacactgccattcacgaatggtccattggaaat---tcgtagtagaattggaaaagtagggcaatcgagagtctttctccaacaact |
34388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 29236 - 29379
Alignment:
| Q |
80 |
ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagt |
179 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| |||||||| | ||| || ||| |
|
|
| T |
29236 |
ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtccattgcaagt---tcgtagt |
29332 |
T |
|
| Q |
180 |
agaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
226 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||| |
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|
| T |
29333 |
agaattggaaaagtagggcaatcgggagtctttctccaacaactatc |
29379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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