View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_19 (Length: 255)
Name: NF0798_low_19
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_19 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 23852161 - 23852387
Alignment:
| Q |
29 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852161 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
23852260 |
T |
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| Q |
129 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23852261 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataactttaacggaagtcatgtttctaa |
23852360 |
T |
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| Q |
229 |
aaacattcagatctggaccatcaagtc |
255 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23852361 |
aaacattcagatctggaccatcaagtc |
23852387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 22618853 - 22619079
Alignment:
| Q |
29 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
128 |
Q |
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||||||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| ||||||| |||||| ||| || ||||||||||| |||| |||| |
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| T |
22618853 |
aacagattcaattttgttttgggaaaggtctagctatttcaaggaagtcaaatttctaagagcttatggaactgaacctttaagagcattgcttccaaga |
22618952 |
T |
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| Q |
129 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
228 |
Q |
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| T |
22618953 |
taaagatagtcaagtttggcacaattactcaaccaaattggaactgaactaatactattgttagaaaggttaatattttcaattgaagtcatgtttctaa |
22619052 |
T |
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| Q |
229 |
aaacattcagatctggaccatcaagtc |
255 |
Q |
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| T |
22619053 |
aagcattcagatctggaccatcaagtc |
22619079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 23751460 - 23751686
Alignment:
| Q |
29 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
128 |
Q |
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||||||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| ||||||| |||||| ||| || ||||||||||| |||| |||| |
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| T |
23751460 |
aacagattcaattttgttttgggaaaggtctagctatttcaaggaagtcaaatttctaagagcttatggaactgaacctttaagagcattgcttccaaga |
23751559 |
T |
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| Q |
129 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
228 |
Q |
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||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
23751560 |
taaagatagtcaagtttggcacaattactcaaccaaattggaactgaactaatactattgttagaaaggttaatattttcaattgaagtcatgtttctaa |
23751659 |
T |
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| Q |
229 |
aaacattcagatctggaccatcaagtc |
255 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
23751660 |
aagcattcagatctggaccatcaagtc |
23751686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 20573319 - 20573093
Alignment:
| Q |
29 |
aacagattcaattttgttttgagaaaggttaagcaattccaaagaagtcaaatttcgaagagctaatggaagtgagccattaagagcatttcttcgaaga |
128 |
Q |
| |
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|||||||||||| |||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |
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| T |
20573319 |
aacagattcaatgttgttttgggaaaggtcaagcaacgtcaaggaagtcaaatttcgaagagctaatggaagtgagccattgagagcattgcttccgaga |
20573220 |
T |
|
| Q |
129 |
taaagatgttgaagtttggcacaattactcaaccaaaatggaactgaactaagactattgttagaaaggacaataacttcaacggaagtcatgtttctaa |
228 |
Q |
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|||||| ||||| |||||||||| |||||||||||||||||||| | ||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
20573219 |
gaaagataacccagttttgcacaattacctaaccaaaatggaactgaactgattctattgttagaaaggtcaatagtttcaattgaagtcatgtttctaa |
20573120 |
T |
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| Q |
229 |
aaacattcagatctggaccatcaagtc |
255 |
Q |
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|| ||||||||| |||||||| ||||| |
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| T |
20573119 |
aagcattcagatttggaccattaagtc |
20573093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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