View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_4 (Length: 521)
Name: NF0798_low_4
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 79 - 492
Target Start/End: Original strand, 34747133 - 34747546
Alignment:
| Q |
79 |
caaaggtagaaagtgtgatggcacactgactcagcaccaattcctctaaaaactggcattttaaaaggggatcagacgaaactgagaggtcattttgcaa |
178 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34747133 |
caaaggtagaaagtgtgatggcacaccgactcagcaccaattcctctaaagactggcattttaaaaggggatcagacgaaactgcgaggtcattttgcaa |
34747232 |
T |
|
| Q |
179 |
atagacacgaagctttctgactctcagatttataacgatggatatccacttgttaatataggaagagtcatacttctcggacattttaagagaaaaactt |
278 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747233 |
atagacgcgaagctttctgactctcagatttataacgatggatatccacttgttaatataggaagagtcatacttctcggacattttaagagaaaaactt |
34747332 |
T |
|
| Q |
279 |
cggatgtgtgcactattcagtcgaagcagtaccctatctacaaagtctacaaaacatgtttttcttatctcgttggaagaacaataccctatgtcatcaa |
378 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747333 |
cggatgtgttcactattcagtcgaagcagtaccctatctacaaagtctacaaagcatgcttttcttatctcgttggaagaacaataccctatgtcatcaa |
34747432 |
T |
|
| Q |
379 |
aatctagttttgtgataaatgtccataggtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaagaaagactgcaacc |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
34747433 |
aatctagttttgtgataaatgtccataggtatatccacctctttgataaaacactggtagaaactgcatccttagtaggaagaaaagaaagaacgcaacc |
34747532 |
T |
|
| Q |
479 |
aataatgtggtcag |
492 |
Q |
| |
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|||||||||||||| |
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| T |
34747533 |
aataatgtggtcag |
34747546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 249 - 490
Target Start/End: Original strand, 34751937 - 34752178
Alignment:
| Q |
249 |
tacttctcggacattttaagagaaaaacttcggatgtgtgcactattcagtcgaagcagtaccctatctacaaagtctacaaaacatgtttttcttatct |
348 |
Q |
| |
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|||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| | | |||||||||||| |
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| T |
34751937 |
tactcctctgacattttaagagaaaaactttggatgtgtgcactattcagatgaagcagtaccctatcaacaaagtctacaaagcctttttttcttatct |
34752036 |
T |
|
| Q |
349 |
cgttggaagaacaataccctatgtcatcaaaatctagttttgtgataaatgtccataggtatatccacctctgtgataaaacactggtcgaaactgcatc |
448 |
Q |
| |
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||| ||||| ||| |||| |||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||| ||||| |||||| || |
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| T |
34752037 |
tgttcaaagaaaaatggttcttgtcgtcaaaatctagtttggtgataaatttccagaggtatatccacttctttgataaaacgctggtacgaactgcttc |
34752136 |
T |
|
| Q |
449 |
cttagtaggaagaaaagaaagactgcaaccaataatgtggtc |
490 |
Q |
| |
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|||||||| ||||||| ||||| || |||||||||||||||| |
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| T |
34752137 |
cttagtagaaagaaaataaagaatgtaaccaataatgtggtc |
34752178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 174 - 492
Target Start/End: Original strand, 34759665 - 34759980
Alignment:
| Q |
174 |
tgcaaatagacacgaagctttctgactctcagatttataacgatggatatccacttgttaatataggaagagtcatacttctcggacattttaagagaaa |
273 |
Q |
| |
|
||||||||||| | ||| ||| ||||||||||||||||||| | ||||||||||| | |||||| ||||| | ||| ||||| ||||| |||||||| |
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|
| T |
34759665 |
tgcaaatagacgcaaagatttttgactctcagatttataaccaaagatatccacttttcaatataagaagaattatatttctctaacattgaaagagaaa |
34759764 |
T |
|
| Q |
274 |
aacttcggatgtgtgcactattcagtcgaagcagtaccctatctacaaagtctacaaaacatgtttttcttatctcgttggaagaacaataccctatgtc |
373 |
Q |
| |
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|||||| ||| || ||||||||||| || ||||||||||| |||||||||||||| ||| |||||||||||| ||| |||| ||| | ||||| |
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| T |
34759765 |
aacttccgatctgcgcactattcagatcaataagtaccctatcgacaaagtctacaaagcatttttttcttatcttgttcgaag---aatggtccatgtc |
34759861 |
T |
|
| Q |
374 |
atcaaaatctagttttgtgataaatgtccataggtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaagaaagactg |
473 |
Q |
| |
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||||||| |||| ||| |||| |||| |||| ||||||||||| ||||||||||| || ||||||||| |||||||| ||||||||||||| || |
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| T |
34759862 |
gtcaaaatttagtcgggtggcaaatttccagaggtttatccacctctttgataaaacacaagtagaaactgcactcttagtagaaagaaaagaaagaatg |
34759961 |
T |
|
| Q |
474 |
caaccaataatgtggtcag |
492 |
Q |
| |
|
|| ||||| |||||||||| |
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|
| T |
34759962 |
cagccaatgatgtggtcag |
34759980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 301 - 492
Target Start/End: Original strand, 34742791 - 34742982
Alignment:
| Q |
301 |
gaagcagtaccctatctacaaagtctacaaaacatgtttttcttatctcgttggaagaacaataccctatgtcatcaaaatctagttttgtgataaatgt |
400 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||| |||||||||||| |||||||| | | | | ||||| ||||||| |||| ||||||| | | |
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| T |
34742791 |
gaagcagtactctatctataaagtctacaaagcatttttttcttatcttgttggaagtaaagtggtccatgtcgtcaaaatttagtcgggtgataatttt |
34742890 |
T |
|
| Q |
401 |
ccataggtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaagaaagactgcaaccaataatgtggtcag |
492 |
Q |
| |
|
||| ||| |||||||||||| ||||||||| ||||| ||| ||| |||||| || |||||||||||||| ||||||||||||||||||||| |
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|
| T |
34742891 |
ccagagggatatccacctctttgataaaacgctggtacaaattgcttccttaatatgaagaaaagaaagaatgcaaccaataatgtggtcag |
34742982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 492
Target Start/End: Original strand, 34755761 - 34755883
Alignment:
| Q |
370 |
tgtcatcaaaatctagttttgtgataaatgtccataggtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaagaaag |
469 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||||| || || |||||| |||||||||||||||||| |||| |
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|
| T |
34755761 |
tgtcgtcaaaatctagtttggtgataaatttccagaggtatatccacttctttgataaaacgctagtacgaactgcttccttagtaggaagaaaaaaaag |
34755860 |
T |
|
| Q |
470 |
actgcaaccaataatgtggtcag |
492 |
Q |
| |
|
| || |||||||||||||||||| |
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| T |
34755861 |
aatgtaaccaataatgtggtcag |
34755883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 34751849 - 34751910
Alignment:
| Q |
176 |
caaatagacacgaagctttctgactctcagatttataacgatggatatccacttgttaatat |
237 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||| ||| | ||||||||||||||||||| |
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|
| T |
34751849 |
caaatagatacaaagatttctgactctcagatttacaaccacagatatccacttgttaatat |
34751910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 34742596 - 34742681
Alignment:
| Q |
109 |
tcagcaccaattcctctaaaaactggcattttaaaaggggatcagacgaaactgagaggtcattttgcaaatagacacgaagcttt |
194 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||| ||||||| || ||| ||||||| ||| || || ||||||| |||| ||||||| |
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|
| T |
34742596 |
tcagcatcaattcctctaaagacttgcatttaaaaagggcataagaggaaactgtgagttctttctgcaaatcgacataaagcttt |
34742681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 483
Target Start/End: Original strand, 51944691 - 51944767
Alignment:
| Q |
407 |
gtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaagaaagactgcaaccaataa |
483 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
51944691 |
gtatatccacctctgtgataaagcaccggtacgaactgcatatttagtaggaagaaaagaaagaatgcgaccgataa |
51944767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 51939669 - 51939752
Alignment:
| Q |
383 |
tagttttgtgataaatgtccataggtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaaga |
466 |
Q |
| |
|
||||||||||| ||| ||||| | ||| ||||||||||||||||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
51939669 |
tagttttgtgacaaacgtccacatgtacctccacctctgtgataaagcactagtacgaactgcatagttagtaggaagaaaaga |
51939752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 37420350 - 37420444
Alignment:
| Q |
376 |
caaaatctagttttgtgataaatgtccataggtatatccacctctgtgataaaacactggtcgaaactgcatccttagtaggaagaaaagaaaga |
470 |
Q |
| |
|
|||||| ||||||||||| ||| ||||| | ||||||||||||| ||||||||||||| || |||||||| | | || |||||||||||||| |
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|
| T |
37420350 |
caaaatatagttttgtgacaaacgtccacatgtatatccacctccgtgataaaacacttgtgcggactgcatcttcaatacgaagaaaagaaaga |
37420444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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