View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0798_low_6 (Length: 398)

Name: NF0798_low_6
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0798_low_6
NF0798_low_6
[»] chr2 (10 HSPs)
chr2 (1-385)||(39814564-39814949)
chr2 (168-385)||(39921978-39922190)
chr2 (1-152)||(12987338-12987496)
chr2 (295-385)||(39805574-39805664)
chr2 (168-263)||(39910807-39910902)
chr2 (293-385)||(39902501-39902589)
chr2 (179-266)||(39927403-39927489)
chr2 (293-385)||(39910959-39911047)
chr2 (293-385)||(39927798-39927886)
chr2 (240-385)||(39825884-39826028)
[»] chr1 (7 HSPs)
chr1 (1-162)||(5721884-5722045)
chr1 (1-159)||(11359328-11359487)
chr1 (1-37)||(52975688-52975724)
chr1 (1-33)||(1280532-1280564)
chr1 (1-33)||(17508545-17508577)
chr1 (1-37)||(43904365-43904401)
chr1 (1-33)||(49105524-49105556)
[»] chr5 (6 HSPs)
chr5 (1-159)||(18691068-18691227)
chr5 (1-159)||(41109009-41109168)
chr5 (1-159)||(33215073-33215230)
chr5 (60-159)||(41109725-41109824)
chr5 (1-32)||(22726503-22726534)
chr5 (1-37)||(33214547-33214583)
[»] chr7 (4 HSPs)
chr7 (1-162)||(17165849-17166014)
chr7 (9-153)||(41483079-41483230)
chr7 (79-151)||(7975991-7976063)
chr7 (1-33)||(29250498-29250530)
[»] chr8 (1 HSPs)
chr8 (1-164)||(36241071-36241234)
[»] chr3 (5 HSPs)
chr3 (1-153)||(25184763-25184916)
chr3 (1-153)||(35390497-35390656)
chr3 (1-36)||(42428432-42428467)
chr3 (1-35)||(55380341-55380375)
chr3 (1-33)||(9678749-9678781)
[»] chr4 (4 HSPs)
chr4 (1-151)||(25542295-25542452)
chr4 (1-35)||(11840907-11840941)
chr4 (1-35)||(48879617-48879651)
chr4 (1-29)||(45019069-45019097)
[»] chr6 (3 HSPs)
chr6 (79-159)||(832201-832281)
chr6 (1-36)||(10857321-10857356)
chr6 (1-58)||(832064-832122)
[»] scaffold0245 (1 HSPs)
scaffold0245 (1-33)||(6210-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-33)||(6540-6572)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 39814564 - 39814949
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814564 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 39814663  T
Q  101 aatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatcaatgtccttcacaatataaaggaccgcgatgtatctgtt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39814664 aatctcccaaataccatagaattatcatctgcatttattcacatctgaaccagaatctatcaatgtccttcacaatataaaggactgcgatgtatctgtt 39814763  T
Q  201 accgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactatataatatgtcaacta-nnnnnnnnnnattgcat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  39814764 accgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactatataatatgtcaactatttttttttttattgcat 39814863  T
Q  300 aacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814864 aacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 39814949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 168 - 385
Target Start/End: Original strand, 39921978 - 39922190
Alignment:
Q  168 cttcacaatataaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactat 267  Q
    ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39921978 cttcacaatataaaggaccacgatgcagctgttactgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaagtat 39922077  T
Q  268 ataatatgtcaactannnnnnnnnnattgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatg 367  Q
    ||||| |||||||||          |||||||||||||||||||||||||||||||||||    ||||||| || |||||||||||||||||||||||||    
T  39922078 ataatttgtcaacta-cagttatttattgcataacacatataattaattcttttgcatta----aatctatatggcagggatccatgatgacaccccatg 39922172  T
Q  368 taaatccaagggcaacag 385  Q
    ||||||||||||||||||    
T  39922173 taaatccaagggcaacag 39922190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 12987496 - 12987338
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatca------ttcctttattatt 93  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||      |||| ||||||||    
T  12987496 ttgggagagactaggctctctgattcctagaggttgattacttttctgcagttactttcctgtatcaataataatacatcacgtgcattcccttattatt 12987397  T
Q  94 atgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaacca 152  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  12987396 atgctataatctcccaaataccatagaattatcattggtatttattcatatctgaacca 12987338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 39805574 - 39805664
Alignment:
Q  295 tgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    |||||||||||||||||||||||||  ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39805574 tgcataacacatataattaattcttcagcattaattcaatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39805664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 39910807 - 39910902
Alignment:
Q  168 cttcacaatataaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaa 263  Q
    ||||||||||||||||||| | ||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39910807 cttcacaatataaaggaccacaatgcagctgttaccatgactaatatttaaaaccttgcttctcacagttaatcaataaaatatacttaacataaa 39910902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 39902501 - 39902589
Alignment:
Q  293 attgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||||||||||||||||||||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39902501 attgcataacacatataattaattcttttgcatt----caatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39902589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 39927403 - 39927489
Alignment:
Q  179 aaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaacta 266  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  39927403 aaaggactgcgatgcagctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaat-tacttaatgtaaacta 39927489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 39910959 - 39911047
Alignment:
Q  293 attgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||| ||||||||||||||||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39910959 attgcataacagatataattaattcttttgcatt----caatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 385
Target Start/End: Original strand, 39927798 - 39927886
Alignment:
Q  293 attgcataacacatataattaattcttttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||||||||||| ||||||||||||||||||||||    |||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39927798 attgcataacagatataattaattcttttgcatt----caatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39927886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 39825884 - 39826028
Alignment:
Q  240 tcaataaaatatacttaatataaactatata----atatgtcaactannnnnnnnnnattgcataacacatataattaattcttttgcattaattcaatc 335  Q
    |||||||||||||| ||||||||||||||||    ||||||||||||          |||||||||  |||||||| ||||||||||||||    |||||    
T  39825884 tcaataaaatatacataatataaactatatatgtaatatgtcaactatatttattt-attgcataaggcatataataaattcttttgcatt----caatc 39825978  T
Q  336 tatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacag 385  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  39825979 tatatggcagggatccatgatgacaccccatgtaaatccaagggcaacag 39826028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5721884 - 5722045
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721884 ttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaat 5721983  T
Q  101 aatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatca 162  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5721984 aatctcccaaataccatagaattatcatcggtatttattcacatctgaaccagaatctatca 5722045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 11359487 - 11359328
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11359487 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 11359388  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11359387 taatctaccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 11359328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52975724 - 52975688
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  52975724 ttgggagagactaggctctctaattcctagaggttgg 52975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1280532 - 1280564
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  1280532 ttgggagagactaggctctctgattcctagagg 1280564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17508545 - 17508577
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||| |||||||||||||||||||||    
T  17508545 ttgggagagacaaggctctctaattcctagagg 17508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43904365 - 43904401
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg 37  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43904365 ttgggagagactaggctctctaatttcaagaggttgg 43904401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49105524 - 49105556
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  49105524 ttgggagagactaggctctctgattcctagagg 49105556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 18691068 - 18691227
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18691068 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 18691167  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18691168 taatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 18691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 41109009 - 41109168
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41109009 ttgggagagactgggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 41109108  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41109109 taatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 41109168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 33215230 - 33215073
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||| |  ||||||| ||||||||||||||    
T  33215230 ttgggagagactaggctctctaatttctagaggttggttacttttctgcagttactttcatgtatcaataataaca--tcattcccttattattatgcaa 33215133  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  33215132 taatctcccaaataccattgaattatcatcggtatttattcacatctgaaccagtatcta 33215073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 41109725 - 41109824
Alignment:
Q  60 tatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41109725 tatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 41109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22726503 - 22726534
Alignment:
Q  1 ttgggagagactaggctctctaattcctagag 32  Q
    ||||||||||||||||||||||||||||||||    
T  22726503 ttgggagagactaggctctctaattcctagag 22726534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33214547 - 33214583
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg 37  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  33214547 ttgggagagactagggtctctaattcctaaaggttgg 33214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 17166014 - 17165849
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatat---caataataatagatcattcctttattattatg 96  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||   ||||||||||| |||||||| |||||||||||    
T  17166014 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgtatgatcaataataatatatcattcccttattattatg 17165915  T
Q  97 caataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatca 162  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  17165914 caataatctcccaaataccatagaattatcatcgatatttattcacatctgaaccagtatctatca 17165849  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 41483079 - 41483230
Alignment:
Q  9 gactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatca------ttcctttattattatgcaata 101  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |||||||||| ||||      |||| ||||||||||||||||    
T  41483079 gactaggctctctaattcctagaggtaggttacttttctgcagttactttcctgtatgaataataatacatcacgtgcattcccttattattatgcaata 41483178  T
Q  102 atctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 153  Q
    |||||||||||||||||||||||||||  |||||||| || |||||||||||    
T  41483179 atctcccaaataccatagaattatcattggtatttatacatatctgaaccag 41483230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 7975991 - 7976063
Alignment:
Q  79 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaacc 151  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||  ||||||||||| |||||||||    
T  7975991 cattccttgattattttgcaataatctcccaagtactgaagaattatcattggtatttattcatatctgaacc 7976063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29250498 - 29250530
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  29250498 ttgggagagactaggctctctgattcctagagg 29250530  T

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Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36241234 - 36241071
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  36241234 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgtatcaataataatacatcattcccttattattatgcaa 36241135  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatcaat 164  Q
    | |||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||| ||||    
T  36241134 t-atctcccaaataccatagaattatcattggtatttattcacatttgaaccagtatctaacaat 36241071  T

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Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 25184763 - 25184916
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||  ||||||||||||||    
T  25184763 ttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctatatcaataataaaacatcattcgcttattattatgcaa 25184862  T
Q  100 taatctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 153  Q
    ||||||||||||||||||||| ||||||    ||||||||||||||||||||||    
T  25184863 taatctcccaaataccatagatttatcagtgatatttattcacatctgaaccag 25184916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 35390497 - 35390656
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttatatcaataataatagat------cattcctttattatt 93  Q
    ||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| | | |||||||||||||| ||      |||| | ||||||||    
T  35390497 ttgggagagactaggctctctaactcctaaaggttggttacctttctgcagttacttacatgtatcaataataatacatcacatgcatttccttattatt 35390596  T
Q  94 atgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 153  Q
     | ||||||||| ||||||||||||||||||||||  ||||||||  | |||||||||||    
T  35390597 ttacaataatctaccaaataccatagaattatcattggtatttatagatatctgaaccag 35390656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42428432 - 42428467
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagaggttg 42428467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55380375 - 55380341
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggtt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  55380375 ttgggagagactaggctctctaattcctagaggtt 55380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9678749 - 9678781
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  9678749 ttgggagagactaggctctctgattcctagagg 9678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 25542452 - 25542295
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctttattattatgcaa 99  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||| | |||||||||||||| |||||||| ||||||||||||||    
T  25542452 ttgggagggactaggctctctaattgctagaggttggttacttttatgcagttactttcctgtatcaataataatacatcattcccttattattatgcaa 25542353  T
Q  100 taatctcccaaataccataga------attatcatctgtatttattcacatctgaacc 151  Q
    |||||||||||||||||||||      ||||||||| |||||||||||||||||||||    
T  25542352 taatctcccaaataccatagaattagaattatcatcggtatttattcacatctgaacc 25542295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11840907 - 11840941
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggtt 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  11840907 ttgggagagactaggttctctaattcctagaggtt 11840941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48879651 - 48879617
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggtt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  48879651 ttgggagagactaggctctctaagtcctagaggtt 48879617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45019097 - 45019069
Alignment:
Q  1 ttgggagagactaggctctctaattccta 29  Q
    |||||||||||||||||||||||||||||    
T  45019097 ttgggagagactaggctctctaattccta 45019069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 832201 - 832281
Alignment:
Q  79 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 159  Q
    |||||| |||||||||| |||||||| |||||||| ||||||||||||||  ||||||| |   ||||||||||| |||||    
T  832201 cattcccttattattatccaataatcccccaaatatcatagaattatcattggtatttaatattatctgaaccagtatcta 832281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10857356 - 10857321
Alignment:
Q  1 ttgggagagactaggctctctaattcctagaggttg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  10857356 ttgggagagactaggctctctaattcctagaggttg 10857321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 832064 - 832122
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg-ttggtacttttctgcagttactttc 58  Q
    ||||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  832064 ttgggagagactaggctctataattcctagaggtttgttagttttatgcagttactttc 832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6210 - 6242
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  6210 ttgggagagactaggctctctgattcctagagg 6242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6540 - 6572
Alignment:
Q  1 ttgggagagactaggctctctaattcctagagg 33  Q
    ||||||||||||||||||||| |||||||||||    
T  6540 ttgggagagactaggctctctgattcctagagg 6572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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