View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0798_low_9 (Length: 349)
Name: NF0798_low_9
Description: NF0798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0798_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 320
Target Start/End: Original strand, 48096541 - 48096848
Alignment:
| Q |
23 |
tacaagaaacttcaaccaatatcaaaccttctt---gcagtataagcggagtccttacggt------caattgtcattatagacagtgatcatgtctata |
113 |
Q |
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| T |
48096541 |
tacaagaaacttcaaccaatatcaaaccttcttcttgcagtataagcggagtccttacggttacggtcaattgtcattatagacagtgatcatgtctata |
48096640 |
T |
|
| Q |
114 |
taaaaagatcaaacaattaagattatcaatttt-taattggccaaaacttctgatgtgagtcgtccggtctctatacaacgcctcaaccaaatttaatct |
212 |
Q |
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| T |
48096641 |
taaaaagatcaaacaattaagattatgaattttttaattggccaaaacttcttatgtgagtcgtccagtctctatacaacgcctcaaccaaatttaatct |
48096740 |
T |
|
| Q |
213 |
acctcaccccagtaacacacacgcacgcgcgcacccacacacgcataatatggtgagagtatacatttaaataggtttatgaaacaagacttaaatgtat |
312 |
Q |
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| T |
48096741 |
acctcaccccactaacacacacgcacgcgcgcacccacacatacataatatggtgagagtatacatttaaataggtttatgaaacaagacttaaatgtat |
48096840 |
T |
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| Q |
313 |
agtatata |
320 |
Q |
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|||||||| |
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| T |
48096841 |
agtatata |
48096848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 48098897 - 48098992
Alignment:
| Q |
225 |
taacacacacgcacgcgcgcacccacacacgcataatatggtgagagtatacatttaaataggtttatgaaacaagacttaaatgtatagtatata |
320 |
Q |
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||||| |||||| ||||||||| | ||||||||||||| |||||||||| |||||||| | | |||||||||||||||| ||||||||||||||| |
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| T |
48098897 |
taacatacacgcgcgcgcgcacacccacacgcataatacggtgagagtaaacatttaatttgacttatgaaacaagacttgaatgtatagtatata |
48098992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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