View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_high_4 (Length: 278)
Name: NF0799_high_4
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 12519853 - 12519716
Alignment:
| Q |
77 |
aagttaaaatggctaaataatgcaaccaagttctttaaactctgcgtatttgcaataaatgttacctgaactaacttaatggggtaccaaagaaaagcca |
176 |
Q |
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| T |
12519853 |
aagttaaaatggctaaataatgcaaccaagttctttaaactctgcgtatttgtaataaatgttacctgaattaacttaatggggtgccaaagaaaagcca |
12519754 |
T |
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| Q |
177 |
caaaacacaatcccgtcccatatagatgtaatgtaatg |
214 |
Q |
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| T |
12519753 |
caaaacacaatcccgtcccatatagatgtaatgtaatg |
12519716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 12490123 - 12489983
Alignment:
| Q |
83 |
aaatggctaaataatgcaaccaagttctttaaactctgcgtat--ttgcaataaatgttac-ctgaactaacttaatggggtaccaaagaaaagccacaa |
179 |
Q |
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|||||||| |||||||||||||||||||| ||| |||| | || | | ||||||||||| ||||| || |||||||||||||||||||| ||||| || |
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| T |
12490123 |
aaatggctgaataatgcaaccaagttcttaaaattctgtgcatagtggtaataaatgttattctgaaatagcttaatggggtaccaaagaagagccataa |
12490024 |
T |
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| Q |
180 |
aacacaatcccgtcccatatagatgtaatgtaatgagaaaag |
221 |
Q |
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| T |
12490023 |
at-acaatcccgtaccatacagatgtaatgtaatgagaaaag |
12489983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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