View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_high_7 (Length: 251)
Name: NF0799_high_7
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 422716 - 422957
Alignment:
| Q |
11 |
cacagatacagtatcatccatcaaaggttgtaagtaaatcctcttagcgaccnnnnnnnnn-cttgacaccaacaaatgctctcaaaatctatataccgt |
109 |
Q |
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| T |
422716 |
cacagatagagtatcatccatcaaaggttgtatgtaaatcctcttagcgaccaaaaaaaaaacttgacaccaacaaatgctctcaaaatctatataccgt |
422815 |
T |
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| Q |
110 |
ctaaaaagacaaatgtattgcaaatatatgcatcctattaacaatctacacacttggagagaaagagatacagagcattctaaatcaaactttagacttc |
209 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
422816 |
ctaaaaagaccaatgtattacaaatatatgcatcctattaacaatctacacacttggagagaaagagatacaaagcattctaaataaaactttagacttc |
422915 |
T |
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| Q |
210 |
aaaagttatagaagacacacttgtatgtaccttagcctgtat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
422916 |
aaaagttatagaagacacacttgtatgtaccttagcttgtat |
422957 |
T |
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