View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0799_low_1 (Length: 590)

Name: NF0799_low_1
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0799_low_1
NF0799_low_1
[»] chr7 (3 HSPs)
chr7 (114-588)||(19278696-19279173)
chr7 (436-550)||(23484618-23484731)
chr7 (319-424)||(27308214-27308319)
[»] chr3 (7 HSPs)
chr3 (114-588)||(54653252-54653729)
chr3 (234-588)||(13077365-13077724)
chr3 (206-588)||(51824989-51825375)
chr3 (205-588)||(47807179-47807564)
chr3 (521-588)||(43102979-43103046)
chr3 (276-403)||(43102857-43102987)
chr3 (451-552)||(37415924-37416025)
[»] chr1 (2 HSPs)
chr1 (120-588)||(3978605-3979074)
chr1 (435-575)||(22590014-22590154)
[»] chr5 (4 HSPs)
chr5 (213-588)||(10085232-10085611)
chr5 (117-387)||(27893375-27893647)
chr5 (205-480)||(1663850-1664134)
chr5 (511-588)||(1664127-1664204)
[»] chr2 (2 HSPs)
chr2 (276-588)||(42027546-42027861)
chr2 (435-575)||(30934919-30935059)
[»] chr4 (2 HSPs)
chr4 (306-588)||(26788871-26789152)
chr4 (342-554)||(3217126-3217338)
[»] chr8 (1 HSPs)
chr8 (435-588)||(42193385-42193536)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 114 - 588
Target Start/End: Complemental strand, 19279173 - 19278696
Alignment:
Q  114 cttcatcttcatcttcttctcatatatgtcatgtgtgaagaacccagaaataacaactttctttcgctatgatcaagttctgttgttcatggtatgtcat 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19279173 cttcatcttcatcttcttctcatatatgccatgtgtgaagaacctagaaataacaactttctttctctatgatcaagttctgttgttcatggtatgtcat 19279074  T
Q  214 gtgtgaagaatagaagaagggaagaatgtagtaattgtatgcttctggttcataaattgttgagtttttgcagaaa---agtggtggtcaccggcgcggt 310  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  19279073 gtgtgaagaatagaagaaggaaagaatggagtaattgtatgattctagttcataaattgttgagtttttgcagaaattaagtggtggtcaccggcgcggt 19278974  T
Q  311 tgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaatcat 410  Q
    || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  19278973 tgtagcggtttccggcacggtggtcgccggtgaaagttctccaatcccaaaatagatgtaggagttttgttgcagacatcatgggtaagaagaaaatcat 19278874  T
Q  411 attagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19278873 attagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggc 19278774  T
Q  511 tttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19278773 tttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 19278696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 23484618 - 23484731
Alignment:
Q  436 ggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagtag 535  Q
    |||||||||||||||||||||||||||||||||  | ||||| ||||   |||||||||| |||  | |||  | ||||||||||||||||  |||| ||    
T  23484618 ggtggccggaaagtaagagagaaggtggtggttgagatttttgaaattcaaccaatctaaaaat-tgatgggtgatttttgaagaggaagaaaagaggag 23484716  T
Q  536 ttcaatggtggtggt 550  Q
    ||||||| |||||||    
T  23484717 ttcaatgatggtggt 23484731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 424
Target Start/End: Original strand, 27308214 - 27308319
Alignment:
Q  319 tttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaatcatattagttt 418  Q
    |||||||||| ||||| | ||||||||||| | ||||||| ||||| ||   ||||||||||||  ||||||||||| |||||||| || |  |||||||    
T  27308214 tttccggcacggtggttgacggtgaaagttcttcaatcccgaaataaattggggggttttgttgttgacatcatggggaagatgaatattaatttagttt 27308313  T
Q  419 ttcaaa 424  Q
    ||||||    
T  27308314 ttcaaa 27308319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 114 - 588
Target Start/End: Original strand, 54653252 - 54653729
Alignment:
Q  114 cttcatcttcatcttcttctcatatatgtcatgtgtgaagaacccagaaataacaactttctttcgctatgatcaagttctgttgttcatggtatgtcat 213  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54653252 cttcatcttcatcttcttctcatatatgccatgtgtgaaaaacccagaaataacaactttctttctctatgatcaagttctgttgttcatggtatgtcat 54653351  T
Q  214 gtgtgaagaatagaagaagggaagaatgtagtaattgtatgcttctggttcataaattgttgagtttttgcagaaa---agtggtggtcaccggcgcggt 310  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||   | |||||||||||||||||||    
T  54653352 gtgtgacgaatagaagaagggaagaatgtagtaattgtatgcttatggttcataaactgttgagtttttgtagaaattaaatggtggtcaccggcgcggt 54653451  T
Q  311 tgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaatcat 410  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  54653452 tgcagcggtttctggcacagtggttgccggtgaaagttctccaatcccaaaatagatgtaggggttttgttgcagacatcatgtgtaagaagaaaatcat 54653551  T
Q  411 attagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggc 510  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54653552 attagtttttcaaatggagatttgtggtggctgaaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggc 54653651  T
Q  511 tttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54653652 tttttgaataggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacgatggagtaatggtg 54653729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 234 - 588
Target Start/End: Original strand, 13077365 - 13077724
Alignment:
Q  234 gaagaatgtagtaattgtatgcttctggttcataaattgtt--gagtttttgcagaaaa---gtggtggtcaccggcgcggttgcagcggtttccggcac 328  Q
    |||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||    | | ||||| ||| | |||||||||||||||||||  |    
T  13077365 gaagaatggagtaattgtatgcttctggttaataaattgttttgagtttttgcagaaattatgcgttggtcgccgacacggttgcagcggtttccggtgc 13077464  T
Q  329 agtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaatcatattagtttttcaaatgga 428  Q
     ||||||||||||||||||| ||| ||||||||||| || || |||||||||||||||||| ||||| ||||  ||||||||||||||||||  ||||||    
T  13077465 ggtggtcgccggtgaaagttctccgatcccaaaataaatatatgggttttgttgcagacatgatggggaagaataaaatcatattagttttttgaatgga 13077564  T
Q  429 gatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatg 528  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13077565 gatttgcggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagagt 13077664  T
Q  529 agagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13077665 agagtagtccaatggtggtggtggtgtggtaaaacgaagttggacggtggagtaatggtg 13077724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 206 - 588
Target Start/End: Original strand, 51824989 - 51825375
Alignment:
Q  206 tatgtcatgtgtgaagaatagaagaagggaagaatgtagtaattgtatgcttctgg-ttcataaattgttgagtttttgcagaaa---agtggtggtcac 301  Q
    |||| ||||||||||||||| ||||| ||||||||  ||||||||||||||| ||| |||||||||||||||||||||||| |||   || |||||||||    
T  51824989 tatgccatgtgtgaagaataaaagaatggaagaattgagtaattgtatgcttttgggttcataaattgttgagtttttgcataaattaagcggtggtcac 51825088  T
Q  302 cggcgcggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagat 401  Q
     | ||| ||||||   ||||||||  | |||||||||| ||||| || | | | ||||||||| || ||||||||||||||||||||| ||| | ||||     
T  51825089 tgacgcagttgcaatagtttccggtgcggtggtcgccgatgaaatttcttcgaccccaaaataaatataggggttttgttgcagacataatgaggaagaa 51825188  T
Q  402 gaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataa 501  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  51825189 gaaaatcatattagtttttcaaatggagatttgtggtggctggaaagtaagagagaaggtgggggttagggtttttaaaatcttatcaatctaataataa 51825288  T
Q  502 gttggtggctttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
     ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51825289 cttgatgcctttttgaagaggaagataagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 51825375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 205 - 588
Target Start/End: Complemental strand, 47807564 - 47807179
Alignment:
Q  205 gtatgtcatgtgtgaagaatagaagaagggaagaatgtagtaattgtatgcttctgg-ttcataaattgttgagtttttgcagaaa---agtggtggtca 300  Q
    ||||| |||| ||||||||||||| ||||||| |||| ||||||||||||||| ||| ||||||   |  |||||||||||| |||   || ||||||      
T  47807564 gtatgccatgggtgaagaatagaataagggaaaaatggagtaattgtatgcttttgggttcatattgttatgagtttttgcataaattaagcggtggtg- 47807466  T
Q  301 ccggcgcggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaaga 400  Q
    |||||||||||||||| ||||||||| | ||||||||||| ||||||| | | ||||||||||| || || ||||||||||||||||||||   | ||||    
T  47807465 ccggcgcggttgcagcagtttccggcgcggtggtcgccggcgaaagttcttcgatcccaaaataaatatacgggttttgttgcagacatcacatgaaaga 47807366  T
Q  401 tgaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataata 500  Q
     |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47807365 agaaaatcatattagtttttcaaatcgagatatgtggtggccggaaagtgagagagaaggtggtggttagggtttttaaaatctta-caatctaataata 47807267  T
Q  501 agttggtggctttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47807266 agttggtgccttttcgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacatcggacggtggagtaatggtg 47807179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 521 - 588
Target Start/End: Original strand, 43102979 - 43103046
Alignment:
Q  521 ggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  43102979 ggaagatgagagtagttcagtggtggtggtggtgtggtaaaacgatgtcagacagtggagtaatggtg 43103046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 403
Target Start/End: Original strand, 43102857 - 43102987
Alignment:
Q  276 agtttttgcagaaa---agtggtggtcaccggcgcggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtagg 372  Q
    ||||||||||||||   ||| |||||| |||||| ||| |||   ||||||| | | ||| ||| ||||||||||||| | ||||||||||| || ||||    
T  43102857 agtttttgcagaaattaagtagtggtcgccggcgaggtcgcactagtttccgacgcggtgatcgtcggtgaaagtttttcgatcccaaaataaatttagg 43102956  T
Q  373 ggttttgttgcagacatcatgggtaagatga 403  Q
    ||||||||||||||||| ||||| |||||||    
T  43102957 ggttttgttgcagacattatggggaagatga 43102987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 552
Target Start/End: Original strand, 37415924 - 37416025
Alignment:
Q  451 agagagaaggtggtggttagggtttttaaaat-cttaccaatctaataataagttggtggctttttgaagaggaagatgagagtagttcaatggtggtgg 549  Q
    |||||||| |||||| || |||| ||| |||| || |||||||||| ||||||||  ||| || ||||||||||||| ||||| | || |||||||||||    
T  37415924 agagagaaagtggtgattggggtatttcaaattctcaccaatctaaaaataagttaatgg-ttattgaagaggaagaagagagaaatttaatggtggtgg 37416022  T
Q  550 tgg 552  Q
    |||    
T  37416023 tgg 37416025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 120 - 588
Target Start/End: Original strand, 3978605 - 3979074
Alignment:
Q  120 cttcatcttcttctcatatatgtcatgtgtgaagaacccagaaataacaactttctttcgctatgatcaagttctgttgttcatggtatgtcatgtgtga 219  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3978605 cttcatcttcttctcatatatgccatgtgtgaagaacccaaaaataacaactttctttttctatgatcaagttctgttgttcatggtatgtcatgtgtga 3978704  T
Q  220 agaatagaagaagggaagaatgtagtaattgtatgcttctggttcataaattgttgagtttttgcagaaa---agtggtggtcaccggcgcggttgcagc 316  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||    
T  3978705 agaatagaagaagggaagaatggagtaattgtacgcttctggttcataaattgttgagtttttgcagaaattaagtggtggtcaccggcgtggttgcagc 3978804  T
Q  317 ggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaatcatattagt 416  Q
    |||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3978805 ggtttccggcacggtggtcgc-ggtgaaagttctcca-tcccaaaatagatgtaggggttttgttgcagacatcatgggtaagaagaaaatcatattagt 3978902  T
Q  417 ttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttg 516  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3978903 ttttcaaatggagatttgtggtggccggaaagtaggagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttg 3979002  T
Q  517 aagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3979003 aagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggaataatggtg 3979074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 435 - 575
Target Start/End: Original strand, 22590014 - 22590154
Alignment:
Q  435 tggtggccggaaagtaagagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagt 533  Q
    ||||||||||||||||||||||||||||||| || |||| ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| || ||     
T  22590014 tggtggccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaagaagaaagg 22590112  T
Q  534 agttcaatggtggtggtggtgtggtaaaacgacgtcggacgg 575  Q
    | || |||||| ||||||| || || ||| || |||||||||    
T  22590113 aatttaatggttgtggtggggttgtcaaaggaggtcggacgg 22590154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 213 - 588
Target Start/End: Original strand, 10085232 - 10085611
Alignment:
Q  213 tgtgtgaagaatagaagaagggaagaatgtagtaattgtatgcttctgg-ttcataaattgttg--agtttttgcagaaa---agtggtggtcaccggcg 306  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||  ||||||||||||||   || | ||||||||||||    
T  10085232 tgtgtgaagaatataagaagggaagaatggagta-ttgtatgcttctgggttcataaattgttgtgagtttttgcagaaattaagcgatggtcaccggcg 10085330  T
Q  307 cggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaa 406  Q
     ||||||||| |||||||||  |||||||||||||||||||| ||  ||||||||||| || ||||| ||||||||||||||||||||| |||| |||||    
T  10085331 tggttgcagcagtttccggcgtagtggtcgccggtgaaagttctctgatcccaaaataaatataggg-ttttgttgcagacatcatggggaagaagaaaa 10085429  T
Q  407 tcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttgg 506  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||   |||  ||||||| |||||||| |||||||||||||||||||    
T  10085430 tcatattagtttttcaaataaagatttgtggtggccggaaagtaagagagaaggtgagagtttaggttttttaaatcttaacaatctaataataagttgg 10085529  T
Q  507 tggctttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    || ||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  10085530 tgcctttttgaagaggaatataagagtagttctatggtggtgttggtgtggtaaaacgacgtccgacggtggagttatggtg 10085611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 117 - 387
Target Start/End: Complemental strand, 27893647 - 27893375
Alignment:
Q  117 catcttcatcttcttctcatatatgtcatgtgtgaagaacccagaaataacaactttctttcgctatgatcaagttctgttgttcatggtatgtcatgtg 216  Q
    ||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||    
T  27893647 catcttcatcttcttctcatatatgtcatgtgtgaatgacccaaaaataacaactttctttctctatgatcaagttctgctgttcacggtctgtcatgtg 27893548  T
Q  217 tgaagaatagaagaagggaagaatgtagtaattgtatgcttctggttcataaattgttgagtttttgcagaa---aagtggtggtcaccggcgcggttgc 313  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||    
T  27893547 tgaagaatagaagaagggaagaatggagtaattgtacacttctggttcataaattgttgagtttttgcaaaaattaagtggtggtcaccggcgcggttgc 27893448  T
Q  314 agcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagac 387  Q
    | |||||| |||||| |||| |||||||||||||| ||| ||||||||||| || | |||||||||||||||||    
T  27893447 aacggttt-cggcacggtggccgccggtgaaagttctccgatcccaaaatatatattggggttttgttgcagac 27893375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 205 - 480
Target Start/End: Original strand, 1663850 - 1664134
Alignment:
Q  205 gtatgtcatgtgtgaagaatagaagaagggaagaatgtagtaattgtatgcttctgg-ttcataaattgt--tgagtttttgcagaa---aagtggtggt 298  Q
    ||||| |||| ||||||||||||||||| ||| |||| ||||||||||||||| ||| ||||||||||||  |||||||||||| ||   ||| ||||||    
T  1663850 gtatgccatgggtgaagaatagaagaagagaataatggagtaattgtatgcttttgggttcataaattgtaatgagtttttgcataatttaagcggtggt 1663949  T
Q  299 cacc----ggcgcggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgg 394  Q
     |||    |||||||||||||| ||||||||| ||||||||||||| ||||||| | | ||||||||||| || |||||||||||||||||||||||  |    
T  1663950 -acctgctggcgcggttgcagcagtttccggcgcagtggtcgccggcgaaagttcttcgatcccaaaataaatataggggttttgttgcagacatcacag 1664048  T
Q  395 gtaagatgaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaa 480  Q
    | |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  1664049 ggaagaagaaaatcatattagtttttcaaattgagatttgtggtagtcggaaagtaagagagaaggtggtggttatggtttttaaa 1664134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 511 - 588
Target Start/End: Original strand, 1664127 - 1664204
Alignment:
Q  511 tttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1664127 tttttaaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagcaatggtg 1664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 276 - 588
Target Start/End: Complemental strand, 42027861 - 42027546
Alignment:
Q  276 agtttttgcagaaa---agtggtggtcaccggcgcggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaatagatgtagg 372  Q
    ||||||||||||||   || ||||||| |||||| ||| | ||  ||||||| | | ||||||| ||||||||||||| | ||||||||||| || ||||    
T  42027861 agtttttgcagaaattaagcggtggtcgccggcggggtcgtagtagtttccgacgcggtggtcgtcggtgaaagtttttcgatcccaaaataaatttagg 42027762  T
Q  373 ggttttgttgcagacatcatgggtaagatgaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttaggg 472  Q
    | ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42027761 gattttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtgatgcttaggg 42027662  T
Q  473 tttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcgga 572  Q
    |||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  42027661 tttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgatgtcaga 42027562  T
Q  573 cggtggagtaatggtg 588  Q
    ||||||||||||||||    
T  42027561 cggtggagtaatggtg 42027546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 575
Target Start/End: Complemental strand, 30935059 - 30934919
Alignment:
Q  435 tggtggccggaaagtaagagagaaggtggtggttagggt-ttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagt 533  Q
    |||| |||||||||||||||||||||||||| || |||| ||| ||| ||| |||||||||| ||||| || |||| || ||||||||||||| || ||     
T  30935059 tggtagccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtgg-ttattgaagaggaagaagaaagg 30934961  T
Q  534 agttcaatggtggtggtggtgtggtaaaacgacgtcggacgg 575  Q
    | || |||||| ||||||| || || ||| || |||||||||    
T  30934960 aatttaatggttgtggtggggttgtcaaaggaggtcggacgg 30934919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 306 - 588
Target Start/End: Complemental strand, 26789152 - 26788871
Alignment:
Q  306 gcggttgcagcggtttccggcacagtggtcgccggtgaaagttttccaatcccaaaa-tagatgtaggggttttgttgcagacatcatgggtaagatgaa 404  Q
    ||||||| | || |||||||| | ||||||| || |||||||| ||| ||||||||| || || ||||||||||||||||||||| ||||  |||| |||    
T  26789152 gcggttgtaacgttttccggcgcggtggtcgtcgatgaaagttatccgatcccaaaaataaatataggggttttgttgcagacataatggagaagaagaa 26789053  T
Q  405 aatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagtt 504  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  26789052 aatcatattaatttttcaaacggagatttgtggtggccggaaaataagagagaaggtggcggttagggtttttaaaattttaccaatctaataataagtt 26788953  T
Q  505 ggtggctttttgaagaggaagatgagagtagttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||    
T  26788952 ggtggctttttgaagaggaagat--gagtagttcgatggtggtggtgttgtggtaaaacgacgttggacggtggagttatggtg 26788871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 342 - 554
Target Start/End: Original strand, 3217126 - 3217338
Alignment:
Q  342 gaaagttttccaatcccaaaatagatgtaggggttttgttgcagacatcatgggtaagatgaaaatcatattagtttttcaaatggagatttgtggtggc 441  Q
    ||||||| || |||||||||||| || |||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  3217126 gaaagttctctaatcccaaaataaatataggggttttgttgcaaacattatggggaagaagaaaatcatattagtttttcaaatagagatttgtggtggc 3217225  T
Q  442 cggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagtagttcaat 541  Q
    |||||| ||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  3217226 cggaaaataagagagaaggtgagagttagggtttttaaaatcttaacaatctaataataagttggtgcctttttgaagaggaagataagagtagttcaat 3217325  T
Q  542 ggtggtggtggtg 554  Q
    |||||||||||||    
T  3217326 ggtggtggtggtg 3217338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 435 - 588
Target Start/End: Complemental strand, 42193536 - 42193385
Alignment:
Q  435 tggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagta 534  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||| || ||| || ||  |||||   ||||  |||||||||||||||  ||||| |    
T  42193536 tggtggctggaaagtaagagagaaggtggtggttggggtttttgaaacctcaccgatatagaaataatagggtg--tttttgaagaggaaggagagagga 42193439  T
Q  535 gttcaatggtggtggtggtgtggtaaaacgacgtcggacggtggagtaatggtg 588  Q
     ||||||||||||||| ||||| | | || ||||||||||||||||||||||||    
T  42193438 tttcaatggtggtggtagtgtgatcatacaacgtcggacggtggagtaatggtg 42193385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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