View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_low_10 (Length: 316)
Name: NF0799_low_10
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 15419489 - 15419614
Alignment:
| Q |
84 |
aaggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcat |
183 |
Q |
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| T |
15419489 |
aaggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcat |
15419588 |
T |
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| Q |
184 |
atgctagctataactcatgtgataac |
209 |
Q |
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| T |
15419589 |
atgccagctataactcatgtgataac |
15419614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 15432633 - 15432738
Alignment:
| Q |
108 |
tgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatg |
202 |
Q |
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| T |
15432633 |
tgagggttcattcagaacctgttacatcaattaattccgcctttgtcaagggtcagaaaatccactgtaacaac-attcatatgaaagctataactcatg |
15432731 |
T |
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| Q |
203 |
tgataac |
209 |
Q |
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||||||| |
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| T |
15432732 |
tgataac |
15432738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 17682651 - 17682524
Alignment:
| Q |
86 |
ggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaatt |
180 |
Q |
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| T |
17682651 |
ggaataatgagtccaatgttaa---gggttcattcagaacctgttacatcaatttattccgcctttgtctagggtctgaaaatccactggaacaacaatt |
17682555 |
T |
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| Q |
181 |
catatgctagc--tataactcatgtgataac |
209 |
Q |
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| T |
17682554 |
catatgccagctatataactcatgtgataac |
17682524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 15080787 - 15080695
Alignment:
| Q |
122 |
gaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatgtgataac |
209 |
Q |
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|||||||||||||||||| |||||| ||||| |||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
15080787 |
gaacctgttacaacaattcattccgtctttgacaagggtcagaaaatccactggaacaacaattcatatgccagctataactcatgtgataac |
15080695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 14662587 - 14662713
Alignment:
| Q |
82 |
caaaggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaac |
176 |
Q |
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|||||||||||| |||||||||||| ||||| || |||| || ||||| ||||||||||||||| ||| ||| |||| |||||| |||||| |
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| T |
14662587 |
caaaggaataatttgtccaatgctaa---gggttttttcagaatcttttacatcaattaattccgcctatgt-aagggtcagaaaatccactggaacaa- |
14662681 |
T |
|
| Q |
177 |
aattcatatgctagctataactcatgtgataac |
209 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |
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|
| T |
14662682 |
-attcatatgccagctataactcatgtgataac |
14662713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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