View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_low_12 (Length: 290)
Name: NF0799_low_12
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 52451367 - 52451096
Alignment:
| Q |
6 |
aaaaagaacacgtcaatagttcaatttaacatgtaaaatctaagcagtgagaaatgcatatattctttctgactaaggcaggaaaaacatcagtagtgaa |
105 |
Q |
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| T |
52451367 |
aaaaagaacacgtcaatagttcaatttaacatgtaaaatctaagcagtgagaaatgcatatattctttctgactaaggcaggaaaaacatcaatagtgaa |
52451268 |
T |
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| Q |
106 |
tactacagtaaatcataccagaaatagagaataaaacatcattttcttgcttaaacagaagacatgtggctaacacctaaatgaatctaaggttgacttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52451267 |
tactacagtaaatcataccagaaatagagaataaaacatcattttcttgcttaaacagaagacatgtggctaacacctaaatgaatctaaggttgacttc |
52451168 |
T |
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| Q |
206 |
gcaaatcaacaaatacaaaactgcatttaagtatctcaattgttaaaactttgtggcaaaagagagccctct |
277 |
Q |
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| T |
52451167 |
gcaaatcaacaaatacaaaactgcatttaagtatctcaattgttaaaactttgtggcaaaagagagccctct |
52451096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 52450683 - 52450557
Alignment:
| Q |
72 |
ttctgactaaggcaggaaaaacatcagtagtgaatactacagtaaatcataccagaaatagagaataaaacatcattttcttgcttaaacagaagacatg |
171 |
Q |
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|||| ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| || |
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| T |
52450683 |
ttctaactaatgcaggagaaacataagtagtaaatactacagtaaatcataccagaaat-gagaataaaacatcacttttttgcttaaacagaagacttg |
52450585 |
T |
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| Q |
172 |
tggctaacacctaaatgaatctaaggtt |
199 |
Q |
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| T |
52450584 |
tggctaacacctaaatgaatctgaggtt |
52450557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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