View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_low_3 (Length: 484)
Name: NF0799_low_3
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 23 - 455
Target Start/End: Original strand, 5750163 - 5750595
Alignment:
| Q |
23 |
tgaacaatataaatcaaggtggactcaattaatatataccatactaccatttgcacatgcatatacacacaacacctaaaattgaagaataaagtattta |
122 |
Q |
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| T |
5750163 |
tgaacaatataaatcaaggtggactcaattaatatataccatactaccatttgcacatgcatatacacacaacacctaaaattgaagaataaagtattta |
5750262 |
T |
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| Q |
123 |
acatagctaaccaaaacaaacgaagataataaaaccaagattattacatgagtaaattaaccaagaggtcacaaaaatcaactaatttgaacttgaagac |
222 |
Q |
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| T |
5750263 |
acatagctaaccaaaacaaacgaagataataaaaccaagattattacatgagtaaattaaccaagaggtcacaaaaatcaactaatttgaacttgaagac |
5750362 |
T |
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| Q |
223 |
tctaaattaaattggtcaattaacgtagaacctttaaaactacttgaaacactccattgatcggagtttgccaccgacgacgacgaaggcaccccgttac |
322 |
Q |
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| T |
5750363 |
tctaaattaaatttgtcaattaacgtagaacctttaaaactacttgaaacactccattgatcggagtttgccaccgacgacgacgaaggcaccccgttac |
5750462 |
T |
|
| Q |
323 |
cgcacttagccaccgtccttacactttctatcaaggcctccgtcctcgactcttgcgacaaaatctccgacaacttctctggacttatcaccaatttcac |
422 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5750463 |
cgcacttagccaccgttcttacactttctatcaaggcctccgtcctcgactcttgcgacaaaatctccgacaacttctctggacttatcaccaatttcac |
5750562 |
T |
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| Q |
423 |
cttccacactccactactattgtacctcggaaa |
455 |
Q |
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| T |
5750563 |
cttccacactccactactattgtacctcggaaa |
5750595 |
T |
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