View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_low_4 (Length: 474)
Name: NF0799_low_4
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 57 - 291
Target Start/End: Complemental strand, 2622506 - 2622265
Alignment:
| Q |
57 |
ttgtggttatgaagtttctcctacattgatgcagatgttttagatcattagtattgataggagaaaaccgaaaaccac--aaaaaggatactgaaatatg |
154 |
Q |
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| T |
2622506 |
ttgtgattatgaagtgtctcctacattgacgcagatgttttagatcattagtactcataggagaaaaccgaaaaccacataaaaaggatacggaaatatg |
2622407 |
T |
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| Q |
155 |
gtgacatatcataataatattaacatcaaaataaaagtcagacaaagtaa--aaagtgcaactatatatgtgattaatgaaaaaataaagtgttagaat- |
251 |
Q |
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| T |
2622406 |
gtgacatatcatcataatattaaggtcagaatagaagtcacacaacataaagatagggcaactatatatgtgattaatgaacagatacaatgttagaatt |
2622307 |
T |
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| Q |
252 |
--ctaagatacatactggtagccaaatgcaggaaattgctac |
291 |
Q |
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| T |
2622306 |
caacaagatacataccggtagccaaatgcaggaaatcgctac |
2622265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 47759418 - 47759513
Alignment:
| Q |
298 |
aaaaaatgaagaaactgaacctgcttcttctgacgagcaaggttccaaattctccaa-acatgttttccaatctagtgttcctctcttgaggactt |
392 |
Q |
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| T |
47759418 |
aaaaaatgaagaaactgaacctgcttcttctgacgagcaaggttccaaattctccaacacatgttttccaatctagtgttcctctcttgaggactt |
47759513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 9325388 - 9325336
Alignment:
| Q |
241 |
agtgttagaatctaagatacatactggtagccaaatgcaggaaattgctacta |
293 |
Q |
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| T |
9325388 |
agtgttagaatctaagaaacataatggtagccaaatgcagaaaattactacta |
9325336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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