View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0799_low_6 (Length: 389)
Name: NF0799_low_6
Description: NF0799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0799_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 176 - 361
Target Start/End: Complemental strand, 34872817 - 34872632
Alignment:
| Q |
176 |
ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtt |
275 |
Q |
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| T |
34872817 |
ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaacaatatgagttgtgtacattaaaagaattaaataaaggacccgtt |
34872718 |
T |
|
| Q |
276 |
tgcaccctataattgttttcttttaagcttaattattgacatgttttatgtactttatgttcgtaggaaaaatgcagcacattcat |
361 |
Q |
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| T |
34872717 |
tgcaccctataattgttttcttttaagcttagttactaacatgttttccgtactttatgttcgtaggaaaaatgcagcacattcat |
34872632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 34872985 - 34872855
Alignment:
| Q |
52 |
gaaagaagtctcaaccatatatagtgttaattaattttttctatcaatgatctatgaaagacataagcataaaagtgctaattgaagttcttgtgggccg |
151 |
Q |
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| T |
34872985 |
gaaagaagtctcaaccatatatagtgttaattaattttttctatcaataatctatgaaagacataagcataaaagtgctaattgaagttcttgtgggccg |
34872886 |
T |
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| Q |
152 |
caaagcgtcaccctacttcctagcttttttg |
182 |
Q |
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| T |
34872885 |
caaagcgtcaccctacttgctagcttatttg |
34872855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 27951239 - 27951345
Alignment:
| Q |
189 |
attcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtttgcaccctataat |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||||| |||| ||||||| || |
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| T |
27951239 |
attcaaatatagtatcaaaataattttaaattttatgtaaaacaatatgagttgcgtagattaaaagaattaaataaaggacctatttgtaccctatgat |
27951338 |
T |
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| Q |
289 |
tgttttc |
295 |
Q |
| |
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||||||| |
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| T |
27951339 |
tgttttc |
27951345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 27948235 - 27948282
Alignment:
| Q |
121 |
taaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctact |
168 |
Q |
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| T |
27948235 |
taaaagtgctaattaaagctcttgtgggccgcaaagcgtcaccctact |
27948282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 27948169 - 27948219
Alignment:
| Q |
71 |
tatagtgttaattaa--ttttttctatcaatgatctatgaaagacataagc |
119 |
Q |
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| T |
27948169 |
tatagtgttaattaaatttttttctatcaataatctatgaaagacataagc |
27948219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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