View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_high_2 (Length: 555)
Name: NF0800_high_2
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 51 - 545
Target Start/End: Complemental strand, 11475924 - 11475442
Alignment:
| Q |
51 |
tgtgcgcgaccctttctggtttctaataccgttgcaaaaagttatttgatgaagagttaacatatagcatagtatgtaatattttatagnnnnnnnntta |
150 |
Q |
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| T |
11475924 |
tgtgcgcgaccctttctggtttctaataccgttgcaaaaagttatttgataaagagttaacatatagcacagtatgtaatattttatagaaaaaaa-ttg |
11475826 |
T |
|
| Q |
151 |
gccaaaaatttataatgctactttcactatgttggttgtattaatttgaccacacggttattcactattgtgatcatatg---gaatatgctatatgaac |
247 |
Q |
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| T |
11475825 |
gccaaaaatttataatgctactttcactatgttggttgtattaatttgaccacacggttcttcactattgtgatcatatgatggaatatgctatatgaac |
11475726 |
T |
|
| Q |
248 |
cttaggaaccatactccacctctttttgtgacaatgttttggattaagaaatgtggtcctctaattaaaacaacatagtggcttccaattttcaatagt- |
346 |
Q |
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| T |
11475725 |
cttaggaaccatactccacctctttttgtgacactgttttggattaagaaatgtggtcctctaattaaaacaacatagtggcttccaattttcaatagta |
11475626 |
T |
|
| Q |
347 |
---aagagctcacagtttgatctnnnnnnnttggggcaattaatcaattaaagtccaagatagaattggatggcataccctccccatgaaatctacttca |
443 |
Q |
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| T |
11475625 |
agaaagagctcgcagtttgatc------------------taaaaaattaaagtccaagatagaattggatggcataccctccccatgaaatctacttca |
11475544 |
T |
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| Q |
444 |
ctccacaccctttatccctcatcttcaaatatccaccatatttatgccacgtggcatgtcaaatatccaagatgcactaaccacacaagacccttccctt |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11475543 |
ctccacaccctttatccctcatcttcaaatatccaccatatttatgccacatggcatgtcaaatatccaagatgcactaaccacacaagacccttccctt |
11475444 |
T |
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