View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_high_4 (Length: 482)
Name: NF0800_high_4
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 5763200 - 5762738
Alignment:
| Q |
1 |
tttttacacgtaaagtttaatttgatttgatacacgaatgtnnnnnnnnnnnntcacctttccagtttccatagatatttttaaaattagcataacaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
5763200 |
tttttacacgtaaagtttaatttgatttgatacacgaatgtaaaaagaaaaaatcacctttcca-------tagatattttaaaaattagcataacaaag |
5763108 |
T |
|
| Q |
101 |
tggcatacttcttttgacaaatttaattagcctaagtcgnnnnnnnnnnnnnntatgatttgacgattataattgattgacagccaaacaaattacacta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5763107 |
tggcatacttcttttgacaaatttaattagcctaagtcaaaaaaaaaatta---atgatttgacgattataattgattgacagccaaacaaattacacta |
5763011 |
T |
|
| Q |
201 |
cgaatttattaacttattcatatattcaatttatgaaaatcaaatgcataataagtattcaacttagtaattaagcaaaaacatcccgctg--------- |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
5763010 |
cgaatttattaatttattcatatattcaatttatgaaaattaaatgcataataagtattcaactta-------agcaaaggcatcccgctgcattatgtg |
5762918 |
T |
|
| Q |
292 |
atcatgttagcgctaactgagnnnnnnnntgcataataagtaaaagactataaaatctataacattataacttttccaaacatattcaatctagaagagt |
391 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762917 |
atcatgtgagcgctaaccgagaaaaaaaatgcataataagtaaaagactataaaatctataacattataacttttccaaacatattcaatctagaagagt |
5762818 |
T |
|
| Q |
392 |
ttgttttgggaagtccatcctaaaaatgcagaattttattttttgggaacaaaacaaatgtagattgtttttatcttcat |
471 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762817 |
ttgttttgggaagtccatcctaaaaatgtagaattttattttttgggaacaaaacaaatgtagattgtttttatcttcat |
5762738 |
T |
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