View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0800_high_8 (Length: 365)

Name: NF0800_high_8
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0800_high_8
NF0800_high_8
[»] chr8 (31 HSPs)
chr8 (207-337)||(604043-604173)
chr8 (207-337)||(44434412-44434542)
chr8 (207-333)||(44429659-44429785)
chr8 (207-337)||(1851158-1851288)
chr8 (207-337)||(30437020-30437150)
chr8 (211-337)||(1199629-1199754)
chr8 (207-336)||(1852305-1852433)
chr8 (207-326)||(44433401-44433520)
chr8 (207-307)||(31247992-31248092)
chr8 (202-278)||(44014974-44015050)
chr8 (55-128)||(9389501-9389574)
chr8 (52-124)||(23086384-23086456)
chr8 (52-124)||(42046068-42046140)
chr8 (52-128)||(14683410-14683486)
chr8 (52-125)||(23959912-23959985)
chr8 (52-128)||(30436852-30436929)
chr8 (56-128)||(1199849-1199921)
chr8 (52-128)||(35618020-35618096)
chr8 (52-128)||(37197304-37197380)
chr8 (56-128)||(44434608-44434680)
chr8 (52-115)||(3990820-3990883)
chr8 (52-123)||(39921852-39921923)
chr8 (54-128)||(603876-603950)
chr8 (56-125)||(38111714-38111783)
chr8 (54-126)||(34948245-34948317)
chr8 (52-123)||(27852994-27853065)
chr8 (70-128)||(30206524-30206582)
chr8 (55-125)||(32063221-32063290)
chr8 (52-124)||(34588443-34588509)
chr8 (84-128)||(3458793-3458837)
chr8 (96-128)||(13461336-13461368)
[»] chr4 (37 HSPs)
chr4 (207-337)||(29968345-29968475)
chr4 (207-337)||(24050718-24050848)
chr4 (211-337)||(47427957-47428083)
chr4 (207-329)||(18000456-18000578)
chr4 (207-337)||(2479210-2479340)
chr4 (212-337)||(41851050-41851176)
chr4 (207-335)||(10466805-10466934)
chr4 (49-128)||(47427783-47427862)
chr4 (52-128)||(24050939-24051015)
chr4 (52-128)||(2479042-2479118)
chr4 (49-125)||(18000260-18000336)
chr4 (52-128)||(52688599-52688675)
chr4 (52-128)||(2177820-2177896)
chr4 (49-128)||(8119284-8119363)
chr4 (52-123)||(23952134-23952205)
chr4 (52-127)||(44500935-44501010)
chr4 (49-128)||(54652889-54652968)
chr4 (55-128)||(29968566-29968639)
chr4 (52-128)||(12795503-12795579)
chr4 (52-128)||(28379305-28379381)
chr4 (52-124)||(37325302-37325374)
chr4 (52-122)||(8396894-8396965)
chr4 (49-128)||(22293671-22293750)
chr4 (52-126)||(48076766-48076840)
chr4 (49-118)||(4942393-4942462)
chr4 (52-125)||(32010492-32010565)
chr4 (52-128)||(36639755-36639831)
chr4 (56-128)||(47769357-47769429)
chr4 (58-128)||(53143031-53143101)
chr4 (52-128)||(28813905-28813981)
chr4 (55-128)||(8478527-8478600)
chr4 (52-125)||(7822299-7822376)
chr4 (74-128)||(52688741-52688795)
chr4 (52-128)||(14989344-14989420)
chr4 (84-128)||(41850909-41850953)
chr4 (98-128)||(10467019-10467049)
chr4 (52-80)||(15465028-15465056)
[»] chr5 (25 HSPs)
chr5 (208-337)||(19123282-19123411)
chr5 (207-337)||(14164384-14164514)
chr5 (219-337)||(31486178-31486296)
chr5 (217-337)||(31487192-31487311)
chr5 (232-337)||(23141162-23141267)
chr5 (54-128)||(14164217-14164291)
chr5 (52-128)||(41511683-41511759)
chr5 (56-128)||(41092282-41092354)
chr5 (58-128)||(16306105-16306175)
chr5 (52-125)||(38004044-38004117)
chr5 (52-128)||(10409926-10410002)
chr5 (52-124)||(20563309-20563381)
chr5 (62-128)||(43394586-43394652)
chr5 (52-128)||(19322769-19322845)
chr5 (56-128)||(38110586-38110658)
chr5 (54-128)||(7672756-7672830)
chr5 (54-128)||(16529355-16529429)
chr5 (55-128)||(16538194-16538267)
chr5 (52-117)||(23141383-23141448)
chr5 (55-124)||(26522722-26522791)
chr5 (52-128)||(19123501-19123577)
chr5 (57-128)||(7129204-7129275)
chr5 (52-128)||(12441628-12441704)
chr5 (207-241)||(7129080-7129114)
chr5 (60-128)||(9487349-9487417)
[»] scaffold0059 (2 HSPs)
scaffold0059 (207-337)||(71177-71307)
scaffold0059 (52-124)||(70592-70664)
[»] scaffold0013 (3 HSPs)
scaffold0013 (207-337)||(104758-104888)
scaffold0013 (207-334)||(127410-127537)
scaffold0013 (52-124)||(104984-105056)
[»] chr7 (41 HSPs)
chr7 (207-337)||(22967916-22968046)
chr7 (207-337)||(9141168-9141298)
chr7 (207-337)||(16375615-16375745)
chr7 (207-295)||(6250273-6250361)
chr7 (219-337)||(11642313-11642431)
chr7 (235-337)||(45286542-45286648)
chr7 (207-283)||(35125345-35125421)
chr7 (49-128)||(32277658-32277737)
chr7 (207-277)||(48639195-48639265)
chr7 (49-128)||(4681247-4681326)
chr7 (52-128)||(2354052-2354128)
chr7 (55-128)||(22773533-22773606)
chr7 (55-128)||(35125513-35125586)
chr7 (52-128)||(1565961-1566037)
chr7 (52-128)||(9396365-9396441)
chr7 (52-128)||(22325022-22325098)
chr7 (52-128)||(34838260-34838336)
chr7 (52-128)||(40449375-40449451)
chr7 (52-127)||(30991680-30991755)
chr7 (54-128)||(9141002-9141076)
chr7 (54-128)||(12140482-12140556)
chr7 (52-128)||(4680524-4680600)
chr7 (52-124)||(18487929-18488001)
chr7 (57-128)||(16673909-16673980)
chr7 (57-128)||(17648277-17648348)
chr7 (58-128)||(6250453-6250523)
chr7 (52-128)||(11650188-11650264)
chr7 (60-124)||(16362193-16362257)
chr7 (52-128)||(21225062-21225138)
chr7 (52-128)||(40409184-40409259)
chr7 (52-128)||(45418309-45418385)
chr7 (52-128)||(48639028-48639104)
chr7 (57-128)||(21128801-21128872)
chr7 (52-119)||(27711948-27712015)
chr7 (56-128)||(2852843-2852915)
chr7 (54-128)||(11642154-11642229)
chr7 (69-128)||(5553591-5553650)
chr7 (65-124)||(40686180-40686239)
chr7 (66-128)||(16375461-16375523)
chr7 (70-128)||(22967792-22967850)
chr7 (96-128)||(16491668-16491700)
[»] chr3 (26 HSPs)
chr3 (207-337)||(53047090-53047220)
chr3 (207-337)||(17757782-17757912)
chr3 (207-337)||(19059102-19059232)
chr3 (202-336)||(2702246-2702379)
chr3 (52-128)||(47501167-47501243)
chr3 (49-128)||(860684-860763)
chr3 (52-128)||(20876501-20876577)
chr3 (52-128)||(23777249-23777325)
chr3 (52-128)||(37760883-37760959)
chr3 (54-128)||(38886848-38886922)
chr3 (55-128)||(53046926-53046999)
chr3 (52-124)||(24365957-24366029)
chr3 (54-124)||(36642752-36642822)
chr3 (52-125)||(25916703-25916776)
chr3 (56-124)||(51654740-51654808)
chr3 (55-122)||(11523319-11523386)
chr3 (52-125)||(10267379-10267452)
chr3 (54-114)||(11454797-11454857)
chr3 (52-127)||(45514236-45514311)
chr3 (55-128)||(836831-836904)
chr3 (83-128)||(17758006-17758051)
chr3 (83-128)||(19059326-19059371)
chr3 (88-128)||(35560656-35560696)
chr3 (55-105)||(2730927-2730977)
chr3 (96-128)||(2702466-2702498)
chr3 (68-128)||(46452582-46452642)
[»] chr1 (35 HSPs)
chr1 (207-337)||(21882582-21882712)
chr1 (207-337)||(38685528-38685657)
chr1 (215-337)||(23480841-23480963)
chr1 (207-337)||(5429431-5429565)
chr1 (52-128)||(28949517-28949593)
chr1 (52-128)||(12116075-12116151)
chr1 (52-128)||(21618810-21618886)
chr1 (49-128)||(4099899-4099978)
chr1 (55-128)||(24595619-24595692)
chr1 (52-128)||(16165200-16165276)
chr1 (52-128)||(27296724-27296800)
chr1 (56-128)||(1648266-1648338)
chr1 (52-128)||(25931344-25931420)
chr1 (52-124)||(39282406-39282478)
chr1 (52-124)||(47791420-47791492)
chr1 (52-126)||(48411593-48411667)
chr1 (52-128)||(3226491-3226567)
chr1 (52-128)||(44264524-44264600)
chr1 (52-124)||(44451676-44451748)
chr1 (61-128)||(44099244-44099311)
chr1 (49-119)||(52741033-52741103)
chr1 (54-127)||(6537119-6537192)
chr1 (52-128)||(5429657-5429733)
chr1 (52-124)||(51114313-51114385)
chr1 (52-124)||(52407490-52407562)
chr1 (57-128)||(1155690-1155761)
chr1 (54-128)||(18913118-18913192)
chr1 (66-128)||(23480683-23480745)
chr1 (62-128)||(38685749-38685815)
chr1 (52-128)||(45416864-45416940)
chr1 (52-124)||(42491603-42491676)
chr1 (74-128)||(21618690-21618744)
chr1 (49-105)||(51271756-51271812)
chr1 (54-124)||(319014-319084)
chr1 (70-128)||(21882778-21882836)
[»] chr6 (15 HSPs)
chr6 (207-337)||(1394140-1394270)
chr6 (207-337)||(17905655-17905785)
chr6 (52-128)||(29202796-29202872)
chr6 (49-128)||(17203574-17203653)
chr6 (207-278)||(29202634-29202705)
chr6 (52-128)||(4099565-4099641)
chr6 (52-124)||(17905488-17905560)
chr6 (52-128)||(1394362-1394438)
chr6 (52-128)||(9829322-9829398)
chr6 (52-128)||(34294603-34294679)
chr6 (54-117)||(25068605-25068668)
chr6 (64-123)||(4810703-4810762)
chr6 (54-128)||(32207920-32207994)
chr6 (63-128)||(26831802-26831867)
chr6 (57-118)||(23622963-23623024)
[»] chr2 (26 HSPs)
chr2 (207-329)||(20639984-20640106)
chr2 (52-128)||(833292-833368)
chr2 (55-128)||(37130774-37130847)
chr2 (52-124)||(2131984-2132056)
chr2 (52-128)||(11658241-11658317)
chr2 (49-125)||(20639788-20639864)
chr2 (52-128)||(44543372-44543448)
chr2 (52-128)||(41327158-41327234)
chr2 (55-128)||(8430579-8430651)
chr2 (55-124)||(14335842-14335911)
chr2 (56-128)||(10128798-10128870)
chr2 (52-128)||(12896052-12896128)
chr2 (54-124)||(11736854-11736924)
chr2 (52-124)||(17370674-17370746)
chr2 (52-128)||(12898637-12898713)
chr2 (52-128)||(27351519-27351595)
chr2 (60-124)||(28611542-28611606)
chr2 (56-128)||(29550732-29550804)
chr2 (69-128)||(30556866-30556925)
chr2 (52-128)||(6348475-6348551)
chr2 (84-124)||(20709601-20709641)
chr2 (69-128)||(11131741-11131800)
chr2 (54-117)||(44257062-44257125)
chr2 (55-117)||(627994-628056)
chr2 (59-127)||(19640521-19640589)
chr2 (59-127)||(19839114-19839182)
[»] scaffold1155 (1 HSPs)
scaffold1155 (207-337)||(659-789)
[»] scaffold0345 (1 HSPs)
scaffold0345 (207-337)||(9428-9558)
[»] scaffold0105 (1 HSPs)
scaffold0105 (207-337)||(29422-29552)
[»] scaffold0294 (1 HSPs)
scaffold0294 (52-125)||(12141-12214)
[»] scaffold0018 (1 HSPs)
scaffold0018 (52-125)||(163396-163469)
[»] scaffold0240 (1 HSPs)
scaffold0240 (52-128)||(13661-13737)
[»] scaffold0504 (1 HSPs)
scaffold0504 (53-124)||(1346-1417)
[»] scaffold0090 (1 HSPs)
scaffold0090 (83-124)||(12013-12054)
[»] scaffold0097 (1 HSPs)
scaffold0097 (84-124)||(13440-13480)
[»] scaffold0167 (1 HSPs)
scaffold0167 (63-117)||(16594-16648)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 604043 - 604173
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  604043 aatcctatcaataattcggtaaaagaaatatgaaatatttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcatatacgacgttag 604142  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    |||||||||| ||||||||| ||||||||||    
T  604143 atgttacattggtatcttcaccatcttcatc 604173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 44434542 - 44434412
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  44434542 aatcctatcaataattcggtaaaagaaatgtgaaatttttagtacattgggatgtagtttcatcacacattgcgaaatacttcttcatatacgacgttag 44434443  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    ||||||||||  |||||||||||||||||||    
T  44434442 atgttacattgatatcttcatcatcttcatc 44434412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 333
Target Start/End: Complemental strand, 44429785 - 44429659
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  44429785 aatcctatcaataattcagtaaaagaaatatgaaatttttagtaccttggcatgtagtttcatcacacattgcgaaatacttcttcatacacgacattag 44429686  T
Q  307 atgttacattagtatcttcatcatctt 333  Q
    | |||||||| ||||||||| ||||||    
T  44429685 acgttacattggtatcttcaccatctt 44429659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 1851288 - 1851158
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||    
T  1851288 aatcctaacaataatccggtaaaagaaatatgaaaattctagtacattggcatgtagtttcatcacacattgcgaaatacttcctcatatacggcgttag 1851189  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    |||| ||||| ||||||||| ||||||||||    
T  1851188 atgtcacattggtatcttcaccatcttcatc 1851158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 30437020 - 30437150
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||||| || || ||||    
T  30437020 aatcctatcaataattcggtaaaagaaatatgaaatctttagtacatcggcatgtagtttcatcacacattgtgaaatactttctcatatacaacattag 30437119  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| |||||||||  |||||||||    
T  30437120 acgttacattggtatcttcactatcttcatc 30437150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 1199754 - 1199629
Alignment:
Q  211 ctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgt 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||| |||||  |    
T  1199754 ctatcaataattcggtaaaagaaatatgaaatttt-agtacattggcatgtagtttcatcacatattgcgaaatacttcctcatatacgacattagacat 1199656  T
Q  311 tacattagtatcttcatcatcttcatc 337  Q
    |||||| ||||||||| ||||||||||    
T  1199655 tacattggtatcttcaccatcttcatc 1199629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 336
Target Start/End: Complemental strand, 1852433 - 1852305
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||| ||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  1852433 aatcctaacaataatccggtaaaaaaaa-atgaaaattttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcatatacgacgttag 1852335  T
Q  307 atgttacattagtatcttcatcatcttcat 336  Q
    |||| ||||| ||||||||| |||||||||    
T  1852334 atgtcacattggtatcttcaccatcttcat 1852305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 44433520 - 44433401
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||  ||| ||||||||||| ||||    
T  44433520 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattgacatgtagtttcatcacacattgcaaaatatttcttcatacacgacattag 44433421  T
Q  307 atgttacattagtatcttca 326  Q
    | ||||| || |||||||||    
T  44433420 acgttaccttggtatcttca 44433401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 31247992 - 31248092
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  |||| |||||||||| |||| |||||    
T  31247992 aatcctatcaataatttggtaaaaaaaatatgaaaattttagtacataggcatgtagtttcatcacacattgcaaaatacttcctcatatacgaagttag 31248091  T
Q  307 a 307  Q
    |    
T  31248092 a 31248092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 44015050 - 44014974
Alignment:
Q  202 tcgacaatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattg 278  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  44015050 tcgataatcctatcaataattcagtaaaagaaatatgaaatatttagtacataggcatgtagtttcatcacacattg 44014974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 9389574 - 9389501
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| |||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  9389574 cgtgctccgctcggatttattataaaaggattgacatacgaataataaaatgcaatatataattggtaacggtg 9389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 23086456 - 23086384
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||| ||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  23086456 acccatgctccgctcgggtttactgtaaagggattgacatacggataataaaatgcaatatataattggtaac 23086384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 42046140 - 42046068
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||    
T  42046140 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaac 42046068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 14683486 - 14683410
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||| ||||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||    
T  14683486 acccgtgctctgctcgagtttattgtaaagggattgacatacgaataataaaatgcaatacataattggtaacggtg 14683410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 23959912 - 23959985
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    |||||||||||| | ||||||||| ||||  |||||||||| | ||||||||||||||||||||||||||||||    
T  23959912 acccgtgctccgtttgggtttattataaagggattgacatacgaataataaaatgcaatatataattggtaacg 23959985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 30436852 - 30436929
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacga-ttgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  || |||||||| | |||||||| ||||||||||||||| ||||||||    
T  30436852 acccgtgctccgctcgggtttattgtaaagggatttgacatacgaataataaagtgcaatatataattgataacggtg 30436929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 1199921 - 1199849
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||  ||||| ||||||||    
T  1199921 gtgctctgctcgggtttattgtaaagtgattgacatatgaataataaaatgcaatatgcaattgataacggtg 1199849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 35618096 - 35618020
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| |||||||||||||||| |||||||   ||||||||| | |||||||||||||||||||||||| ||||||||    
T  35618096 acccatgctccgctcgggtttcttgtaaaggaattgacatacgaataataaaatgcaatatataattgataacggtg 35618020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 37197304 - 37197380
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| ||||||| ||||||||||||||||  |||||| ||| | |||||||||||||||||||||| ||||||||||    
T  37197304 acccatgctccgatcgggtttattgtaaagggattgatatacgaataataaaatgcaatatataataggtaacggtg 37197380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 44434680 - 44434608
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||  || |||||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||    
T  44434680 gtgctccgtacgagtttattgtaaagcgattgacatacgaataataaaatgcaaaatataattggtaacggtg 44434608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 3990883 - 3990820
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatata 115  Q
    |||||||||||||||||||||||||||||  | |||||||| | ||||||||||||||||||||    
T  3990883 acccgtgctccgctcgggtttattgtaaagaggttgacataagaataataaaatgcaatatata 3990820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 39921852 - 39921923
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaa 123  Q
    |||||||||  ||||||||||||||||||  |||||||||| | |||||||||||||||||||||| |||||    
T  39921852 acccgtgctttgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaa 39921923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 603876 - 603950
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| || ||||||||  ||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  603876 ccgtgctccgcgcgagtttattgctaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 603950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 38111783 - 38111714
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    |||||| | ||| ||||||||||||  |||||||||| | ||||||||||||||||||||||||||||||    
T  38111783 gtgctctgttcgagtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacg 38111714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 34948317 - 34948245
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacgg 126  Q
    ||||||| || ||||||||||||||||  |||||||||| | ||||||||||| ||||||||||||| |||||    
T  34948317 ccgtgcttcgttcgggtttattgtaaatggattgacatacgaataataaaatgtaatatataattgggaacgg 34948245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 27852994 - 27853065
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaa 123  Q
    |||||||||| ||||| ||||||||||||  |||| ||||| | ||||||||||||||||||||| ||||||    
T  27852994 acccgtgctctgctcgagtttattgtaaagagattaacatacgaataataaaatgcaatatataactggtaa 27853065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 30206582 - 30206524
Alignment:
Q  70 tttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  30206582 tttattgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 30206524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 32063290 - 32063221
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    ||||||||| |||| |||||||||||  |||| ||||| | |||||||||||||||||||||| |||||||    
T  32063290 cgtgctccg-tcggatttattgtaaagggattaacatacgaataataaaatgcaatatataataggtaacg 32063221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 34588443 - 34588509
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||||||||||  |||||      | |||||||||||||||| ||||||||||||    
T  34588443 acccgtgctccgctcgggtttattgtaaagggattg------gaataataaaatgcaatacataattggtaac 34588509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 3458793 - 3458837
Alignment:
Q  84 attgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||    
T  3458793 attgacatacgaataataaaatgcaatatataataggtaacggtg 3458837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 13461336 - 13461368
Alignment:
Q  96 ataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||||||    
T  13461336 ataataaaatgcaatatataattggtaacggtg 13461368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 29968475 - 29968345
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| | ||||    
T  29968475 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtattttcatcacacattgtgaaatacttcctcatatacggcattag 29968376  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||||||||||||| ||||||||||    
T  29968375 acgttacattagtatcttcaccatcttcatc 29968345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 24050848 - 24050718
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||| ||||| ||||    
T  24050848 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattacaaaatacttcctcatatacgacattag 24050749  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    |||||||||| ||||||||| ||||||||||    
T  24050748 atgttacattggtatcttcaccatcttcatc 24050718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 47427957 - 47428083
Alignment:
Q  211 ctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgt 310  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  47427957 ctatcaataattcggtaaaagaaatataaattttttagtacattggcatgtagtttcatcacacattgtaaaatactttctcatatacgacgttagatgt 47428056  T
Q  311 tacattagtatcttcatcatcttcatc 337  Q
    |||||||||||||||| ||||||||||    
T  47428057 tacattagtatcttcaccatcttcatc 47428083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 18000456 - 18000578
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||| | ||| ||||    
T  18000456 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacaaattgcaaaatacttcctcatataagacattag 18000555  T
Q  307 atgttacattagtatcttcatca 329  Q
    | |||||||| ||||||||||||    
T  18000556 acgttacattggtatcttcatca 18000578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 2479210 - 2479340
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||| |||||| ||    ||||    
T  2479210 aatcctatcaataatttggtaaaagaaatatgaaaattttagtacattggcatgtagtttcatcatacattgcgaaatactttctcatatacagaattag 2479309  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||||||||||||| ||||||||||    
T  2479310 acgttacattagtatcttcaccatcttcatc 2479340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 337
Target Start/End: Original strand, 41851050 - 41851176
Alignment:
Q  212 tatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgtt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||  ||| | ||| ||||| |||    
T  41851050 tatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgcagtttcatcacacattgcgaaatacttcccaatatatgacattagacgtt 41851149  T
Q  312 acattag-tatcttcatcatcttcatc 337  Q
    ||||| | |||||||| ||||||||||    
T  41851150 acattggttatcttcaccatcttcatc 41851176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 10466934 - 10466805
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaattttt-agtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgtta 305  Q
    ||||||||||||||||||||||||||||||| |  ||||| | ||||||| ||||| ||||||||||||||||  |||| |||||||||| |||||||||    
T  10466934 aatcctatcaataattcggtaaaagaaatataattttttttattacattgacatgttgtttcatcacacattgctaaatacttcctcatatacgacgtta 10466835  T
Q  306 gatgttacattagtatcttcatcatcttca 335  Q
    || ||||||||||||| |||||||||||||    
T  10466834 gacgttacattagtattttcatcatcttca 10466805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 47427783 - 47427862
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  47427783 tttatccgtgctccgctcggatttattgtaaaaggattgacatatgaataataaaatgcaatatataattggtaacggtg 47427862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 24051015 - 24050939
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||    
T  24051015 acccgtgctccgctcgggtttattgtaaaaagattgacatacgaataataaaatgcaatatataattagtaacggtg 24050939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 2479042 - 2479118
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||||    
T  2479042 acccgtgctctgctcgggtttattgtaaagggattgacatatgaatgataaaatgcaatatataattggtaacggtg 2479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 18000260 - 18000336
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    ||||||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||||||||||||||||    
T  18000260 tttacccgtgctccgctcgggtttattgtaaagggattgacaaacgaataataaaatgcaatatataattggtaacg 18000336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 52688599 - 52688675
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  52688599 acccgtgctccgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 52688675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 2177896 - 2177820
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| |||||||||||||||||||||  ||||| |||| | |||||||||||||||||||||||||||||||||    
T  2177896 acccgtgttccgctcgggtttattgtaaagggattggcatacgaataataaaatgcaatatataattggtaacggtg 2177820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 8119363 - 8119284
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||| |||||||||||||| |||  |||||||||| | |||||||||||||||||||||||| ||||||||    
T  8119363 tttacccgtgctctgctcgggtttattgcaaagggattgacatacgaataataaaatgcaatatataattgttaacggtg 8119284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 23952134 - 23952205
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaa 123  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| |||||    
T  23952134 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaa 23952205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 44501010 - 44500935
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggt 127  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||  |||||||    
T  44501010 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatttataacggt 44500935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 54652889 - 54652968
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| |||||||||| ||| ||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  54652889 tttatccgtgctccgttcgagtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 54652968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 29968639 - 29968566
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||| |  |||||||||| | ||||| |||||||||||||||||||||||||||    
T  29968639 cgtgctccgctcgggtttattgtatagggattgacatacgaataatgaaatgcaatatataattggtaacggtg 29968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 12795503 - 12795579
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| |||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||| ||||    
T  12795503 acccgtgcttcgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaatggtg 12795579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 28379305 - 28379381
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| ||||| |||||||||||  |||||||||| | |||||||||||||||||||||||||||| ||||    
T  28379305 acccgtgctccactcggatttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaatggtg 28379381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 37325374 - 37325302
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||| |||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||    
T  37325374 acccgtgctccactcgggtttattgtaaatagattgacataagaataataaaatgcaatatataataggtaac 37325302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 8396894 - 8396965
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacg-attgacatatggataataaaatgcaatatataattggta 122  Q
    ||||||||||||||||||||||||| |||| | ||||||||| | |||||||||||||||||||||||||||    
T  8396894 acccgtgctccgctcgggtttattgcaaaaaggattgacatacgaataataaaatgcaatatataattggta 8396965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 22293750 - 22293671
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||  | || |||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  22293750 tttacccgtgctccaattggatttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 22293671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 48076840 - 48076766
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacgg 126  Q
    |||||||||||||||| ||||||||||||  |||||||||| | ||||||||||||||||||| || ||||||||    
T  48076840 acccgtgctccgctcgagtttattgtaaagggattgacatacgaataataaaatgcaatatatgataggtaacgg 48076766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 4942462 - 4942393
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataatt 118  Q
    |||| ||| |||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||    
T  4942462 tttatccgcgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatt 4942393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 32010492 - 32010565
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    |||||||||||||| ||||||||||||||  |||||||||| | ||||||||||||||||||| || |||||||    
T  32010492 acccgtgctccgcttgggtttattgtaaagggattgacatacgaataataaaatgcaatatattataggtaacg 32010565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 36639831 - 36639755
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| || |||||||||||||||||||   ||||||||| | |||||||||||||||||||||| ||||||||||    
T  36639831 acccgtacttcgctcgggtttattgtaaaggaattgacatacgaataataaaatgcaatatataataggtaacggtg 36639755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 47769429 - 47769357
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||| |||||||||||  |||||||||| | |||||||||||||||||||||| ||||| ||||    
T  47769429 gtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaatggtg 47769357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 53143031 - 53143101
Alignment:
Q  58 gctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| ||||||||||||||||||  ||||||||||   |||||||||||||||||||||||| ||||||||    
T  53143031 gctctgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattgataacggtg 53143101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 28813981 - 28813905
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||| |||| |||||||| ||   ||||||||| | ||| |||||||||||||||||||||||||||||    
T  28813981 acccgtgctccgatcggatttattgtgaaggaattgacatacgaatattaaaatgcaatatataattggtaacggtg 28813905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 8478527 - 8478600
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||   ||||||||||||  ||||||||||   |||||||||||||||||||||| ||||||||||    
T  8478527 cgtgctccgcttatgtttattgtaaagggattgacatacaaataataaaatgcaatatataataggtaacggtg 8478600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 7822376 - 7822299
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataat----aaaatgcaatatataattggtaacg 125  Q
    |||||||||||||||||||||||||||||  ||||||| ||   |||||    |||||||||||||||||||||||||    
T  7822376 acccgtgctccgctcgggtttattgtaaagggattgacgtacaaataataaaaaaaatgcaatatataattggtaacg 7822299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 52688741 - 52688795
Alignment:
Q  74 ttgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  52688741 ttgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 52688795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 14989420 - 14989344
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| || |||||||||| |||||  |||||||||| | ||| |||||| ||||||||||| | ||||||||    
T  14989420 acccgtgcttcgttcgggtttatcgtaaagagattgacatacgaatactaaaattcaatatataatagttaacggtg 14989344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 41850909 - 41850953
Alignment:
Q  84 attgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||    
T  41850909 attgacatacgaataataaaatgcaatatataattgataacggtg 41850953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Complemental strand, 10467049 - 10467019
Alignment:
Q  98 aataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||||    
T  10467049 aataaaatgcaatatataattggtaacggtg 10467019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 15465056 - 15465028
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaa 80  Q
    |||||||||||||||||||||||||||||    
T  15465056 acccgtgctccgctcgggtttattgtaaa 15465028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 208 - 337
Target Start/End: Complemental strand, 19123411 - 19123282
Alignment:
Q  208 atcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttaga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  19123411 atcctatcaataattcggtaaaagaaatatgaaatttttagtacattgacatgtagtttcatcacacattgtgaaatacttcctcatatacgacattaga 19123312  T
Q  308 tgttacattagtatcttcatcatcttcatc 337  Q
     |||||||| ||||||||| ||||||||||    
T  19123311 cgttacattggtatcttcaccatcttcatc 19123282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 14164384 - 14164514
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| ||||| ||||    
T  14164384 aatcatatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgcaaaatacttcctcatatacgacattag 14164483  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  14164484 acgttacattggtatcttcaccatcttcatc 14164514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 31486178 - 31486296
Alignment:
Q  219 aattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgttacattag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||||||  ||||||| |    
T  31486178 aattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgcaaaatacttcctcatatacgacgttagacattacattgg 31486277  T
Q  319 tatcttcatcatcttcatc 337  Q
    |||||||| ||||||||||    
T  31486278 tatcttcaccatcttcatc 31486296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 217 - 337
Target Start/End: Original strand, 31487192 - 31487311
Alignment:
Q  217 ataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgttacatt 316  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  31487192 ataatttggtaaaataaatatgaaatttttagtacattggcatgtagtttcatcgcacattgtgaaatacttcctcatatgcgacgttagatgttacatt 31487291  T
Q  317 agtatcttcatcatcttcatc 337  Q
     ||| ||||| ||||||||||    
T  31487292 ggta-cttcaccatcttcatc 31487311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 23141267 - 23141162
Alignment:
Q  232 aaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgttacattagtatcttcatcatc 331  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||| ||||||||| ||||    
T  23141267 aaatatgaaatttttaatacgttggcatgtagtttcatcacacattgcgaaatacttcctcatatacgacgttagacgttacattggtatcttcaccatc 23141168  T
Q  332 ttcatc 337  Q
    ||||||    
T  23141167 ttcatc 23141162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 14164217 - 14164291
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  14164217 ccgtgctccgttcgggtttattgtaaaaggattgacatatgaataataaaatgcaatatataattggtaacggtg 14164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 41511759 - 41511683
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  41511759 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 41511683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 41092282 - 41092354
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  41092282 gtgctccgctcgggtttattgtaaagtgattgacatacgaataataaaatgcaatatataataggtaacggtg 41092354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 16306175 - 16306105
Alignment:
Q  58 gctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| ||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||    
T  16306175 gctccgttcgggtttattgtaaaaggattgacatacgaataataaaatgtaatatataattggtaacggtg 16306105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 38004044 - 38004117
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    |||||||||||||||||||||||||||||  |||| ||||||| | |||||||||||||||||||| |||||||    
T  38004044 acccgtgctccgctcgggtttattgtaaagagatttacatatgaaaaataaaatgcaatatataataggtaacg 38004117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 10410002 - 10409926
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| |||||||||||||||||  |||||||||| | |||||||||||||||||||||| | ||||||||    
T  10410002 acccgtgctccactcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatagataacggtg 10409926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 20563381 - 20563309
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||| ||||||||||||  |||||||||  | |||||||||||||||||||||||||||||    
T  20563381 acccgtgctccgctcgagtttattgtaaagggattgacatgcgaataataaaatgcaatatataattggtaac 20563309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 43394586 - 43394652
Alignment:
Q  62 cgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  43394586 cgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 43394652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 19322845 - 19322769
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| || | ||||||||||||   ||||||||| |||||||||||||||||||||||||| ||||||||    
T  19322845 acccgtgctccacttgagtttattgtaaaggaattgacatacggataataaaatgcaatatataattgataacggtg 19322769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 38110658 - 38110586
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||||||||||||||||  ||||||||||   |||||||||||||||||||| ||||||||||||    
T  38110658 gtgctccgttcgggtttattgtaaagggattgacatacaaataataaaatgcaatatatatttggtaacggtg 38110586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 7672756 - 7672830
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||||||||||||| |  |||||||||| | || ||||||||||||||||||| ||||| ||||    
T  7672756 ccgtgctccgctcgggtttattgtatagggattgacatacgaatgataaaatgcaatatataataggtaatggtg 7672830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 16529429 - 16529355
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| ||||||||||||  |||||||||| | ||||| ||||||||||||| || ||||||||||    
T  16529429 ccgtgctccgctcgagtttattgtaaagggattgacatacgaataatgaaatgcaatatatgataggtaacggtg 16529355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 16538267 - 16538194
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||| |  |||||||||| | ||||||||||||||||||| || ||||| ||||    
T  16538267 cgtgctccgctcgggtttattgtagagggattgacatacgaataataaaatgcaatatatgataggtaatggtg 16538194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 23141448 - 23141383
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataat 117  Q
    ||||||||||||| | |||||||||||||  |||||||||| | ||||||||||||||||||||||    
T  23141448 acccgtgctccgcacaggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 23141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 26522722 - 26522791
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||| ||||||||| |||||||||||  |||||||||| | |||||||||||||||||||||| ||||||    
T  26522722 cgtgttccgctcggatttattgtaaagagattgacatacgaataataaaatgcaatatataataggtaac 26522791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 19123577 - 19123501
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||  ||||| |||||||||||  ||||||||||   ||||||||||| |||||||||||||||||||||    
T  19123577 acccgtgctctactcggatttattgtaaagggattgacatacaaataataaaatgtaatatataattggtaacggtg 19123501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 7129275 - 7129204
Alignment:
Q  57 tgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| ||||| |||||||||||||  |||||||||| | ||||||||||||||||||||||| |||| ||||    
T  7129275 tgcttcgctcaggtttattgtaaagggattgacatacgaataataaaatgcaatatataattagtaatggtg 7129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 12441628 - 12441704
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||| |||||||||||||  ||||| |||| | ||||||||||  | |||||||||| ||||||||    
T  12441628 acccgtgctccgctcaggtttattgtaaagggattggcatacgaataataaaatatagtatataattgataacggtg 12441704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 7129114 - 7129080
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaa 241  Q
    |||||||||||||||||||||||||||||||||||    
T  7129114 aatcctatcaataattcggtaaaagaaatatgaaa 7129080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 9487349 - 9487417
Alignment:
Q  60 tccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||  |||||||||||   |||||||||   |||||||||||||||||||||||| ||||||||    
T  9487349 tccgctcgaatttattgtaaaggaattgacatacaaataataaaatgcaatatataattgataacggtg 9487417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 71177 - 71307
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||    
T  71177 aatcctatcaataattcagtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatacttcctcatatatgacattag 71276  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  71277 acgttacattggtatcttcaccatcttcatc 71307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 70592 - 70664
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||| |||| |||||||||||||||| ||  |||||| ||| | ||||||||||||| |||||||||||||||    
T  70592 acccatgcttcgctcgggtttattgttaagggattgagatacgaataataaaatgcattatataattggtaac 70664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 104888 - 104758
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||| ||||    
T  104888 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgagaaatacttccttatatacgacattag 104789  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  104788 acgttacattggtatcttcaccatcttcatc 104758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 127537 - 127410
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  127537 aatcctatcaataattcggtaaaagaaatataaaaattttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcatatacgacattag 127438  T
Q  307 atgttacattagtatcttcatcatcttc 334  Q
    | |||| ||| ||||||||| |||||||    
T  127437 acgttatattggtatcttcaccatcttc 127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 105056 - 104984
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||| |||||||||||||| ||||  |||||| ||| | ||||||||||||| |||||||||||||||    
T  105056 acccgtgcttcgctcgggtttattataaagggattgagatacgaataataaaatgcattatataattggtaac 104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 22967916 - 22968046
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  22967916 aatcctatcaataattcggtaaaataaatatgaaaattttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcatatacgacgttag 22968015  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | || ||||| || |||||| ||||||||||    
T  22968016 acgtcacattggtgtcttcaccatcttcatc 22968046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 9141168 - 9141298
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||| |||||||||| ||||| ||||    
T  9141168 aatcctatcaataattcggtaaaagaaatatgaaaattttagtacattggcatgcattttcatcacacattgcgaaatacttcctcatatacgacattag 9141267  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| |||| |||||    
T  9141268 acgttacattggtatcttcaccatcatcatc 9141298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 16375615 - 16375745
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||| || | ||||| ||||||||||    
T  16375615 aatcttatcaataattcggtaaaaaaaaaatgaaaattttagtacattggcatgtagtttcatcacacattgcgaaatactacatcatatacgacgttag 16375714  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | || ||||| ||||||||| ||||||||||    
T  16375715 acgtcacattggtatcttcaccatcttcatc 16375745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 6250361 - 6250273
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcata 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  6250361 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattgtcatgtagtttcatcacacattgcgaaatacttcctcata 6250273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 11642313 - 11642431
Alignment:
Q  219 aattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgttacattag 318  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||  |||| ||||| |||||||| |    
T  11642313 aattcggtaaaagaaatataaaatttttagtacattgacatgtagtttcatcacacattgcgaaatacttcctcatatgcgacattagacgttacattgg 11642412  T
Q  319 tatcttcatcatcttcatc 337  Q
    |||||||| ||| ||||||    
T  11642413 tatcttcaccattttcatc 11642431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 45286648 - 45286542
Alignment:
Q  235 tatgaaatttttagtacattggcatgtagtttcatcacacattgtgaa----atgcttcctcatacacgacgttagatgttacattagtatcttcatcat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||| ||||| ||||| |||||||| |||||||||||||    
T  45286648 tatgaaatttttagtacattggcatgtagtttcatcacacattgtgaattacttacttcctcatatacgacattagacgttacattggtatcttcatcat 45286549  T
Q  331 cttcatc 337  Q
    |||||||    
T  45286548 cttcatc 45286542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 35125421 - 35125345
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  35125421 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacacgggcatgtagtttcatcacatattgtgaaa 35125345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 32277658 - 32277737
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  32277658 tttacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 32277737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 48639195 - 48639265
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacatt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  48639195 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtattttcattacacatt 48639265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 4681247 - 4681326
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| |||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  4681247 tttatccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 4681326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 2354052 - 2354128
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| ||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  2354052 acccgtgctccgcttgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 2354128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 22773533 - 22773606
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||  |||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||||    
T  22773533 cgtgctccgctcgaatttattgtaaaaggattgacatacgaataataaaatgcaatatataataggtaacggtg 22773606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 35125586 - 35125513
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| ||||| ||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||    
T  35125586 cgtgctctgctcgagtttattgtaaagggattaatatatggataataaaatgcaatatataattggtaacggtg 35125513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 1565961 - 1566037
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | | | ||||||||||||||||||||| |||||||    
T  1565961 acccgtgctccgctcgggtttattgtaaagggattgacatacgaacagtaaaatgcaatatataattgggaacggtg 1566037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 9396441 - 9396365
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||| ||||||| |||||||||| | |||||||||| ||||||||||| | ||||||||    
T  9396441 acccgtgctccgctcgggtttaatgtaaaaggattgacatacgaataataaaatacaatatataatagttaacggtg 9396365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 22325098 - 22325022
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| ||||||||||| |||||||| |||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  22325098 acccatgctccgctcgagtttattgaaaagagattgacatacgaataataaaatgcaatatataattggtaacggtg 22325022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 34838336 - 34838260
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| || ||||||||||||||||||  |||||||||| | |||||||||||||||||||||||| ||||||||    
T  34838336 acccgtgttctgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattgataacggtg 34838260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 40449375 - 40449451
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||| ||||||||||||||||  |||||||||| | |||||||||||||||||||||||| ||||||||    
T  40449375 acccgtgccccgatcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattgataacggtg 40449451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 30991755 - 30991680
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggt 127  Q
    ||||||||||||||||| |||||||||||  |||||||||| | ||||||||||||||||||| || |||||||||    
T  30991755 acccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatatgataggtaacggt 30991680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 9141002 - 9141076
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||||||||||||||||||  |||||||||| | ||||||||||| ||||||||||| |||||||||    
T  9141002 ccgtgctctgctcgggtttattgtaaagggattgacatacgaataataaaatgaaatatataattagtaacggtg 9141076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 12140482 - 12140556
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||| ||||||||  |||||||||||  |||||||||||||||||||||| ||||||||||    
T  12140482 ccgtgctccggtcgggttcattgtaaagggattgacatataaataataaaatgcaatatataataggtaacggtg 12140556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 4680524 - 4680600
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| ||| |||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||| ||||    
T  4680524 acccgtgatccactcgggtttattgtaaagagattgacatacgaataataaaatgcaatatataataggtaaaggtg 4680600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 18488001 - 18487929
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||||||||||||||| |||||  |||||||||| | |||||||||||||| || |||||||||||    
T  18488001 acccgtgctccgctcgggtttatagtaaagggattgacatacgaataataaaatgcaaaatgtaattggtaac 18487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 16673980 - 16673909
Alignment:
Q  57 tgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| |||| ||||||||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  16673980 tgctccactcgagtttattgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 16673909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 17648348 - 17648277
Alignment:
Q  57 tgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| |||| ||||||||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  17648348 tgctccactcgagtttattgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 17648277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 6250523 - 6250453
Alignment:
Q  58 gctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| | |||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||||||    
T  6250523 gctccgcccaggtttattgtaaagggattgacatataaataataaaatgtaatatataattggtaacggtg 6250453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 11650264 - 11650188
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| ||||||| |||||||||||  |||||||||| | ||||||||||||||||||| || | ||||||||    
T  11650264 acccgtgcttcgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatatgatagataacggtg 11650188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 16362193 - 16362257
Alignment:
Q  60 tccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||  |||||||||| | ||||||||||||| |||||||| ||||||    
T  16362193 tccgctcgggtttattgtaaagggattgacatacgaataataaaatgcactatataataggtaac 16362257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 21225138 - 21225062
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| |||| | |||||||||  |||  |||||||||||| |||||||| ||||||||||||||||||||||||    
T  21225138 acccgtgttccgtttgggtttatttcaaagagattgacatatgaataataaattgcaatatataattggtaacggtg 21225062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 40409184 - 40409259
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| |||||||||||| |||||||||||  |||||||||| | | |||||||||||||||||||| ||||||||||    
T  40409184 acccatgctccgctcggatttattgtaaagggattgacatacgaa-aataaaatgcaatatataataggtaacggtg 40409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 45418309 - 45418385
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| ||| | |||||||||||  ||||||||||   |||||||||||||||||||||||| ||||||||    
T  45418309 acccgtgctccactcagttttattgtaaagggattgacatacaaataataaaatgcaatatataattgataacggtg 45418385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 48639028 - 48639104
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||||| ||||||| |||  ||||||||||   ||||||||||| |||||||||||| ||||||||    
T  48639028 acccgtgctccgctcggatttattgcaaatagattgacatacaaataataaaatgtaatatataattgataacggtg 48639104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 21128872 - 21128801
Alignment:
Q  57 tgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| | |||||||||| |||   ||||||||| | |||||||||||||||||||||||||||||||||    
T  21128872 tgctccgtttgggtttattggaaaggaattgacatacgaataataaaatgcaatatataattggtaacggtg 21128801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 27711948 - 27712015
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattg 119  Q
    |||||||||||||||| ||||||| ||||   ||||||||| | ||||||||||||||||||||||||    
T  27711948 acccgtgctccgctcgagtttattataaagatattgacatacgaataataaaatgcaatatataattg 27712015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 2852843 - 2852915
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||  ||||||||||||  |||||||||| | |||||||||||||||||||||| || |||||||    
T  2852843 gtgctccgttcaagtttattgtaaagggattgacatacgaataataaaatgcaatatataataggcaacggtg 2852915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 11642154 - 11642229
Alignment:
Q  54 ccgtgctccgctcggg-tttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||| ||||||||||||  ||||| ||| | | ||||||||||||||||||| |||||| ||||    
T  11642154 ccgtgctccgctcggggtttattgtaaaagaattgatatacgaaaaataaaatgcaatatataaatggtaatggtg 11642229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 5553591 - 5553650
Alignment:
Q  69 gtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| ||  |||||||||||| ||||||||||| |||||||||||| ||| ||||    
T  5553591 gtttattgttaagggattgacatatgaataataaaatgaaatatataattgataatggtg 5553650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 40686180 - 40686239
Alignment:
Q  65 tcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||| ||||   ||||||||  | |||||||||||||||||||||||||||||    
T  40686180 tcgggtttattataaaggaattgacatgcgaataataaaatgcaatatataattggtaac 40686239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 16375461 - 16375523
Alignment:
Q  66 cgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||| ||  |||| ||||| |  |||||||||| |||||||||||||||||||||    
T  16375461 cgggtttattgttaagggattaacatacgagtaataaaatgtaatatataattggtaacggtg 16375523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 22967792 - 22967850
Alignment:
Q  70 tttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||  ||||||||||   |||||||||||||||||||||||||||| ||||    
T  22967792 tttattgttaagggattgacatacaaataataaaatgcaatatataattggtaagggtg 22967850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 16491668 - 16491700
Alignment:
Q  96 ataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||||||||||||||||||    
T  16491668 ataataaaatacaatatataattggtaacggtg 16491700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 53047090 - 53047220
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |||     
T  53047090 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagcttcatcacacattgtgaaatacttcctcatatacgacattaa 53047189  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | ||||||||  ||| |||| ||||||||||    
T  53047190 acgttacattgttattttcaccatcttcatc 53047220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 17757912 - 17757782
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||| |||||    
T  17757912 aatcctatcaataatttggtaaaagaaatatgaaaattttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcgtatacgatgttag 17757813  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | || ||||| ||||||||| ||||||||||    
T  17757812 acgtcacattggtatcttcaccatcttcatc 17757782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 19059232 - 19059102
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||| |||||    
T  19059232 aatcctatcaataatttggtaaaagaaatatgaaaattttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcgtatacgatgttag 19059133  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | || ||||| ||||||||| ||||||||||    
T  19059132 acgtcacattggtatcttcaccatcttcatc 19059102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 2702379 - 2702246
Alignment:
Q  202 tcgacaatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgac 301  Q
    |||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||| || || ||    
T  2702379 tcgataattctatcaataattcggtaaaagaa-tatgaaattcttagtacattggcatgtaatttcatcacacattgcgaaatacttcctcctataccac 2702281  T
Q  302 gttagatgttacattagtatcttcatcatcttcat 336  Q
     ||||| |||||||| ||||||| | |||||||||    
T  2702280 attagacgttacattggtatcttgaccatcttcat 2702246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 47501167 - 47501243
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  47501167 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 47501243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 860763 - 860684
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||| |||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  860763 tttacccgtgctccgctctggtttattgtaaagagattgacatacgaataataaaatgcaatatataattggtaacggtg 860684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 20876501 - 20876577
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| ||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  20876501 acccgtgttccgctcggatttattgtaaaaggattgacatacgaataataaaatgcaatatataattggtaacggtg 20876577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 23777325 - 23777249
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| ||||| ||||    
T  23777325 acccgtgctccgctcgggtttattgtaaagagattgacatatgaataataaaatgcaatatataataggtaatggtg 23777249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 37760959 - 37760883
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  37760959 acccgtgctctgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 37760883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 38886848 - 38886922
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| |||||||| |||  |||||||||||  |||||||||||||||||||||||||||||||||    
T  38886848 ccgtgctccgctcgagtttattgcaaagggattgacatataaataataaaatgcaatatataattggtaacggtg 38886922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 53046926 - 53046999
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||| ||||||||||||   ||||||||| | |||||||||||||||||||||||||||||||||    
T  53046926 cgtgctccgctcgagtttattgtaaatgaattgacatacgaataataaaatgcaatatataattggtaacggtg 53046999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 24366029 - 24365957
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||| || ||||||    
T  24366029 acccgtgctccgctcgggtttattgtaaagagattgacatacgaataataaaatgcaatatatgataggtaac 24365957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 36642752 - 36642822
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||| |||| |||||||  |||||||||| |||||||||||||||||||||||| ||||||    
T  36642752 ccgtgctccgctcgagtttgttgtaaagggattgacatacggataataaaatgcaatatataataggtaac 36642822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 25916703 - 25916776
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    ||||||||  ||| |||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||    
T  25916703 acccgtgcgtcgcacgggtttattgttaaaggattgacatatgaaaaataaaatgcaatatataattggtaacg 25916776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 51654808 - 51654740
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||| ||||    
T  51654808 gtgctccgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattgataac 51654740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 11523386 - 11523319
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggta 122  Q
    ||||||||||||||||| ||||||||  |||||| ||| | |||||||||||||||||||||||||||    
T  11523386 cgtgctccgctcgggttgattgtaaagggattgatatacgaataataaaatgcaatatataattggta 11523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 10267452 - 10267379
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    |||||| || ||||| |||||||||||||  |||||||||| | ||||||||||| ||||||||||||||||||    
T  10267452 acccgtacttcgctctggtttattgtaaagggattgacatacgaataataaaatgtaatatataattggtaacg 10267379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 11454857 - 11454797
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatat 114  Q
    ||||||||||||||| |||||||||||  |||||||||| | |||||||||||||||||||    
T  11454857 ccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatat 11454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 45514236 - 45514311
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggt 127  Q
    ||||||| |||||||| |||||| |||||| |||||| ||| | ||||||||||||||||||| || |||||||||    
T  45514236 acccgtgttccgctcgtgtttatcgtaaaaggattgatatacgaataataaaatgcaatatatgataggtaacggt 45514311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 836831 - 836904
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| |||||| | ||||||||||||  ||||||||||   |||||||||||||||||||||| ||||||||||    
T  836831 cgtggtccgcttgagtttattgtaaagtgattgacatacaaataataaaatgcaatatataataggtaacggtg 836904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 17758051 - 17758006
Alignment:
Q  83 gattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||    
T  17758051 gattgacatacgaataataaaatgtaatatataattggtaacggtg 17758006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 19059371 - 19059326
Alignment:
Q  83 gattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||    
T  19059371 gattgacatacgaataataaaatgtaatatataattggtaacggtg 19059326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 35560696 - 35560656
Alignment:
Q  88 acatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  35560696 acatatgaataataaaatgcaatatataataggtaacggtg 35560656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 2730977 - 2730927
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaat 105  Q
    ||||||||||||||||||| ||||||  |||||||||| | ||||||||||    
T  2730977 cgtgctccgctcgggtttaatgtaaagggattgacatacgaataataaaat 2730927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 2702498 - 2702466
Alignment:
Q  96 ataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||||||||||||||||||    
T  2702498 ataataaaatacaatatataattggtaacggtg 2702466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 46452642 - 46452582
Alignment:
Q  68 ggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||||  |||||| ||| | |||||||||||||||||||||| ||||| ||||    
T  46452642 ggtttattttaaagggattgatatacgaataataaaatgcaatatataatcggtaatggtg 46452582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 21882712 - 21882582
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  21882712 aatcctatcaataattcggtaaaataaatatgaaaattttagtacattggcatgtagtttcatcacacattgcgaaatacttcctcatatacgacgttag 21882613  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | || ||||| || |||||| ||||||||||    
T  21882612 acgtcacattggtgtcttcaccatcttcatc 21882582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 38685657 - 38685528
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||| ||||| ||||    
T  38685657 aatcctatcaataattcggtaaaa-aaatatgaaatttttagtacattggcatgtagtttcatcacacattgcaaaatatttcctcatatacgacattag 38685559  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  38685558 acgttacattggtatcttcaccatcttcatc 38685528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 215 - 337
Target Start/End: Original strand, 23480841 - 23480963
Alignment:
Q  215 caataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttagatgttaca 314  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||| |||| || |||    
T  23480841 caataattcggtaaaagaaatatgaaaattttagtacattggcacgtagtttcatcacacattgcgaaatacttcctcatatacgacgctagacgtcaca 23480940  T
Q  315 ttagtatcttcatcatcttcatc 337  Q
    || ||||||||| ||||||||||    
T  23480941 ttggtatcttcaccatcttcatc 23480963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 5429565 - 5429431
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattg----tgaaatgcttcctcatacacgacg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||| |||||||||| ||||      
T  5429565 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacactgcgaacgaaatacttcctcatatacgata 5429466  T
Q  303 ttagatgttacattagtatcttcatcatcttcatc 337  Q
    ||| |||||||||| ||||||||| ||||||||||    
T  5429465 ttaaatgttacatttgtatcttcaccatcttcatc 5429431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 28949517 - 28949593
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||||    
T  28949517 acccgtgctccgctcgggtttattgtaaaaggattgacatacgaataataaaatgcaatatataataggtaacggtg 28949593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 12116151 - 12116075
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  12116151 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 12116075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 21618886 - 21618810
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  21618886 acccgtgctccgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 21618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 4099899 - 4099978
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| |||||||||||||||||||||||||  |||||||||| | |||||||||| ||||||||||||||||||||||    
T  4099899 tttaccagtgctccgctcgggtttattgtaaagggattgacatacgaataataaaattcaatatataattggtaacggtg 4099978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 24595692 - 24595619
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||    
T  24595692 cgtgctccgatcgggtttattgtaaagagattgacatatgcataataaaatgcaatatataataggtaacggtg 24595619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 16165200 - 16165276
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||| ||||||||||||  |||||||||| | ||||| |||||||||||||||||||||||||||    
T  16165200 acccgtgctccgctcgagtttattgtaaagggattgacatacgaataatgaaatgcaatatataattggtaacggtg 16165276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 27296800 - 27296724
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||| ||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  27296800 acccgtgctccgctcgagtttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 27296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 1648338 - 1648266
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||  ||||| |||| | |||||||||||||||||||||||||||| ||||    
T  1648338 gtgctccgctcgggtttattgtaaagggattggcatacgaataataaaatgcaatatataattggtaatggtg 1648266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 25931344 - 25931420
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| |||||||  |||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  25931344 acccgtactccgcttaggtttattgtaaagtgattgacatacgaataataaaatgcaatatataattggtaacggtg 25931420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 39282478 - 39282406
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||||||| | |||||||||||  |||||||||| | |||||||||||||||||||||||||||||    
T  39282478 acccgtgctccgctcagatttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaac 39282406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 47791492 - 47791420
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||| |||||||||| |||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  47791492 acccgtactccgctcggatttattgtaaaggaattgacatatgaataataaaatgcaatatataattggtaac 47791420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 48411593 - 48411667
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacgg 126  Q
    |||||||| ||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| | ||||||    
T  48411593 acccgtgccccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatagataacgg 48411667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 3226491 - 3226567
Alignment:
Q  52 acccgtgctccgct-cgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| |||||||||||||||  |||||||||| | |||||||| ||||||||||||||||||||||||    
T  3226491 acccgtgctccgcttcgggtttattgtaaagggattgacatacgaataataaa-tgcaatatataattggtaacggtg 3226567  T

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Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 44264600 - 44264524
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| ||||||||||||||    || ||||| | |||||||||||||||||||||||||||||||||    
T  44264600 acccgtgctccgctagggtttattgtaaaggatttaacatacgaataataaaatgcaatatataattggtaacggtg 44264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 44451676 - 44451748
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||| ||||||||| ||||  |||||| ||| | |||||||||||||||||||||||||||||    
T  44451676 acccgtgctccgctagggtttattataaagggattgatatacgaataataaaatgcaatatataattggtaac 44451748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 44099244 - 44099311
Alignment:
Q  61 ccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| ||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  44099244 ccgctcgggcttattgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 44099311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 52741103 - 52741033
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattg 119  Q
    |||||||||| || | ||||||||||||||||  |||||||||| | ||||||||||||||||||||||||    
T  52741103 tttacccgtgttctgttcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 52741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 6537119 - 6537192
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggt 127  Q
    |||||||| |||||| |||||||||||  | |||||||| | |||||||||||||||||||||||| |||||||    
T  6537119 ccgtgctctgctcggatttattgtaaagaggttgacatacgaataataaaatgcaatatataattgataacggt 6537192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 5429733 - 5429657
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||||| ||||| |||||  |||||||||  | ||||||||||| |||||||||||| ||||||||    
T  5429733 acccgtgctccgctcggatttatggtaaagggattgacatgcgaataataaaatgtaatatataattgataacggtg 5429657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 51114385 - 51114313
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||||||||| |||||||||||  |||||| ||| | ||||||||||||||||||| || ||||||    
T  51114385 acccgtgctccgctcggatttattgtaaagagattgatatacgaataataaaatgcaatatatgataggtaac 51114313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 52407490 - 52407562
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||| ||||||||||||  ||||| |||| | |||||||||||||||||||| ||| ||||    
T  52407490 acccgtgctccgctcgagtttattgtaaagggattgccatacgaataataaaatgcaatatatatttgataac 52407562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 1155690 - 1155761
Alignment:
Q  57 tgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| ||||||| ||||  |||||||||| | |||||||||||||||||||||| ||||| ||||    
T  1155690 tgctccgctcgagtttattataaagggattgacatacgaataataaaatgcaatatataataggtaatggtg 1155761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 18913192 - 18913118
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||   |||||||||||  |||||| ||| | |||||||||||||||||||||||||| ||||||    
T  18913192 ccgtgctccgctcaaatttattgtaaagggattgatatacgaataataaaatgcaatatataattggtcacggtg 18913118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 23480683 - 23480745
Alignment:
Q  66 cgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||| ||  |||||||||| | |||||||||| ||||||||||||||||||||||    
T  23480683 cgggtttattgttaactgattgacatacgaataataaaatacaatatataattggtaacggtg 23480745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 38685815 - 38685749
Alignment:
Q  62 cgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| ||||||| ||||  |||| ||||| | |||||||||||||||||||||||||||||||||    
T  38685815 cgctcgagtttattttaaagggattaacataagaataataaaatgcaatatataattggtaacggtg 38685749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 45416864 - 45416940
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| | ||| |||||||| ||||| |||||||||| | ||||||||||||||||  |||||| ||||||||    
T  45416864 acccgtgctacactcaggtttattataaaaggattgacatacgaataataaaatgcaataagtaattgataacggtg 45416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 42491603 - 42491676
Alignment:
Q  52 acccgtgctccgctcgggt--ttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||| ||  ||||| ||||| |||||||||| | |||||||||||||||||||||| ||||||    
T  42491603 acccgtgctccgctcgtgtgtttattttaaaa-gattgacatacgaataataaaatgcaatatataataggtaac 42491676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 21618744 - 21618690
Alignment:
Q  74 ttgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||  ||||||||||   |||||||||||||||||||||||||||||||||    
T  21618744 ttgtaaagggattgacatacaaataataaaatgcaatatataattggtaacggtg 21618690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 51271756 - 51271812
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaat 105  Q
    |||| ||||||||||||||| |||||||||| | |||||||||| | ||||||||||    
T  51271756 tttatccgtgctccgctcggatttattgtaataggattgacatacgaataataaaat 51271812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 319084 - 319014
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||  ||||||||||||   ||||||||| | ||||||||||  |||||||||| ||||||    
T  319084 ccgtgctccgctcaagtttattgtaaaggaattgacatacgaataataaaatataatatataataggtaac 319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 21882836 - 21882778
Alignment:
Q  70 tttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||| ||  ||||||||||   |||||||||||||||||||||||||||| ||||    
T  21882836 tttattgttaagggattgacatacaaataataaaatgcaatatataattggtaagggtg 21882778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 1394270 - 1394140
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||| | ||| ||||    
T  1394270 aatcctatcaataattcggtaaaagagatatgaaatttttagtatattggcatgtagtttcataacacattgtgaaatacttcttcatatatgacattag 1394171  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  1394170 acgttacattggtatcttcaccatcttcatc 1394140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 17905655 - 17905785
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  |||| |||||| ||| ||||| ||||    
T  17905655 aatcctatcaataattcggtaaaagaactatgaaatttttagtccattggcatgtagtttcatcacacattgcaaaatacttccttatatacgacattag 17905754  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||| ||| ||||||||||    
T  17905755 acgttacattcgtatcctcaccatcttcatc 17905785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 29202872 - 29202796
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||    
T  29202872 acccgtgctccgctcgggtttattgtaaagggattgacatacggataataaaatgtaatatataattggtaacggtg 29202796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 17203653 - 17203574
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||| |||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  17203653 tttacccgtgctccactcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 17203574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 29202705 - 29202634
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattg 278  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  29202705 aatcctatcaataatttggtaaaagaagtatgaattttttagtacattggcatgtagtttcatcacacattg 29202634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 4099565 - 4099641
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||| |||||||||    
T  4099565 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattagtaacggtg 4099641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 17905488 - 17905560
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||    
T  17905488 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaac 17905560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 1394438 - 1394362
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| ||| |||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  1394438 acccgtgctcctctcaggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 1394362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 9829398 - 9829322
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||| ||| | |||||||||||||||||||||| ||||||||||    
T  9829398 acccgtgctccgctcgggtttattgtaaagggattgatatacgaataataaaatgcaatatataataggtaacggtg 9829322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 34294679 - 34294603
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||   |||||| || | |||||||||||||||||||||||| ||||||||    
T  34294679 acccgtgctccgctcgggtttattgtaaaggaattgacgtacgaataataaaatgcaatatataattgataacggtg 34294603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 25068668 - 25068605
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataat 117  Q
    |||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||    
T  25068668 ccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 25068605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 4810703 - 4810762
Alignment:
Q  64 ctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaa 123  Q
    |||||||||||||||||  |||||||||| | |||||||||||||||||||||| |||||    
T  4810703 ctcgggtttattgtaaagagattgacatacgaataataaaatgcaatatataataggtaa 4810762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 32207920 - 32207994
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||| |||||| ||||||||  ||| ||||||||||   |||||||||||||||||||||||| ||| ||||    
T  32207920 ccgtgcttcgctcgagtttattgcgaaatgattgacatagaaataataaaatgcaatatataattgataatggtg 32207994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 26831802 - 26831867
Alignment:
Q  63 gctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||| ||||||||||||  ||| ||||| | |||||||||| ||||||||||||| ||||||||    
T  26831802 gctcggatttattgtaaaaaaattaacatacgaataataaaatacaatatataattgataacggtg 26831867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 23623024 - 23622963
Alignment:
Q  57 tgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataatt 118  Q
    ||||||||||| ||||||| ||||| ||||||||||   ||||||||||| |||| ||||||    
T  23623024 tgctccgctcgagtttattataaaatgattgacataccaataataaaatgtaatacataatt 23622963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 20639984 - 20640106
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||| | ||| ||||    
T  20639984 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacaaattgcaaaatacttcctcatataagacattag 20640083  T
Q  307 atgttacattagtatcttcatca 329  Q
    | |||||||| ||||||||||||    
T  20640084 acgttacattggtatcttcatca 20640106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 833292 - 833368
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  833292 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 833368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 37130774 - 37130847
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  37130774 cgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaacggtg 37130847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 2131984 - 2132056
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||    
T  2131984 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattggtaac 2132056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 11658317 - 11658241
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||   ||||||||| | |||||||||||||||||||||||||||||||||    
T  11658317 acccgtgctccgctcgggtttattgtaaaggcattgacatacgaataataaaatgcaatatataattggtaacggtg 11658241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 20639788 - 20639864
Alignment:
Q  49 tttacccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    ||||||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||||||||||||||||    
T  20639788 tttacccgtgctccgctcgggtttattgtaaagggattgacaaacgaataataaaatgcaatatataattggtaacg 20639864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 44543372 - 44543448
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  44543372 acccgtgctccgctcgggtttattgtaaatggattgacatacgaataataaaatgcaatatataataggtaacggtg 44543448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 41327234 - 41327158
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||||||||| |||||||||||  |||||||||| | |||||||||||||||||||||||| ||||||||    
T  41327234 acccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatataattgataacggtg 41327158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 8430579 - 8430651
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||||| ||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  8430579 cgtgctccgcttgggtttattgtaaag-gattgacatacgaataataaaatgcaatatataattggtaacggtg 8430651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 14335842 - 14335911
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||| ||||    
T  14335842 cgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattgataac 14335911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 10128798 - 10128870
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||||||||||||  |||||||||| | ||||||||||| ||||||||||||||| |||||    
T  10128798 gtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgaaatatataattggtagcggtg 10128870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 12896052 - 12896128
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||| |||||||||||||||||| |||||  |||||||||| | |||||||||||||||||||||| ||||||||||    
T  12896052 acccatgctccgctcgggtttatcgtaaagggattgacatacgaataataaaatgcaatatataataggtaacggtg 12896128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 11736924 - 11736854
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||||||| |||||||||||  |||||||||| | ||||||||||||||||||||| |||||||    
T  11736924 ccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatataactggtaac 11736854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 17370746 - 17370674
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||| |||||||||| |||||||||||  |||||||||| | |||||||||| ||||||||||||||||||    
T  17370746 acccgtactccgctcggatttattgtaaagagattgacatacgaataataaaatacaatatataattggtaac 17370674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 12898713 - 12898637
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||||||  ||||||||||||  |||||||||  | |||||||||| ||||||||||| ||||||||||    
T  12898713 acccgtgctccgctcaagtttattgtaaagggattgacatgcgaataataaaatacaatatataataggtaacggtg 12898637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 27351519 - 27351595
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||  ||| |||||||||||  ||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  27351519 acccgtgcgtcgcacgggtttattgataagggattgacatacgaataataaaatgcaatatataattggtaacggtg 27351595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 28611542 - 28611606
Alignment:
Q  60 tccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||| ||||||||||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  28611542 tccgcttgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattggtaac 28611606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 29550804 - 29550732
Alignment:
Q  56 gtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||||| ||||||||||||  |||||||||| | |||||||||| || |||||||| ||||||||||    
T  29550804 gtgctccgctcgagtttattgtaaatggattgacatacgaataataaaatacagtatataataggtaacggtg 29550732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 30556866 - 30556925
Alignment:
Q  69 gtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| ||| |||||| ||||  |||||||||||||||||||||||||||||||||    
T  30556866 gtttattgttaaaggattgaaatataaataataaaatgcaatatataattggtaacggtg 30556925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 6348551 - 6348475
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||| |||||||||| ||||||||||||  |||||| ||| | | |||||||||||||||||||| ||||| ||||    
T  6348551 acccgcgctccgctcgagtttattgtaaagggattgatatacgaaaaataaaatgcaatatataataggtaaaggtg 6348475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 20709641 - 20709601
Alignment:
Q  84 attgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  20709641 attgacatacgaataataaaatgcaatatataattggtaac 20709601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 11131800 - 11131741
Alignment:
Q  69 gtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    ||||||||| ||  |||||||| | | |||||||||||||||||||||||| ||||||||    
T  11131800 gtttattgttaagagattgacaaacgaataataaaatgcaatatataattgataacggtg 11131741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 44257125 - 44257062
Alignment:
Q  54 ccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataat 117  Q
    |||||||||||||   |||||||||||  |||||| ||| | ||||||||||||||||||||||    
T  44257125 ccgtgctccgctcaaatttattgtaaagagattgatatacgaataataaaatgcaatatataat 44257062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 628056 - 627994
Alignment:
Q  55 cgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataat 117  Q
    ||||||||| |||| |||||||||||  |||||| ||| | ||||||||||| ||||||||||    
T  628056 cgtgctccgttcggatttattgtaaagagattgagatacgaataataaaatgtaatatataat 627994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 19640589 - 19640521
Alignment:
Q  59 ctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggt 127  Q
    |||||||||||||||| |||||  |||||| ||| | || |||||||||||||||| || | |||||||    
T  19640589 ctccgctcgggtttatagtaaagggattgatatacgaatgataaaatgcaatatatgatagataacggt 19640521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 19839182 - 19839114
Alignment:
Q  59 ctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggt 127  Q
    |||||||||||||||| |||||  |||||| ||| | || |||||||||||||||| || | |||||||    
T  19839182 ctccgctcgggtttatagtaaagggattgatatacgaatgataaaatgcaatatatgatagataacggt 19839114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 659 - 789
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||  |||  |||||| ||| ||||||||||    
T  659 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattgacatgtgatttcatcacacattgcaaaacacttccttatatacgacgttag 758  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  759 acgttacattggtatcttcaccatcttcatc 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 9558 - 9428
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||  |||  |||||| ||| ||||||||||    
T  9558 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattgacatgtgatttcatcacacattgcaaaacacttccttatatacgacgttag 9459  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  9458 acgttacattggtatcttcaccatcttcatc 9428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 29422 - 29552
Alignment:
Q  207 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattggcatgtagtttcatcacacattgtgaaatgcttcctcatacacgacgttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||  |||  |||||| ||| ||||||||||    
T  29422 aatcctatcaataattcggtaaaagaaatatgaaatttttagtacattgacatgtgatttcatcacacattgcaaaacacttccttatatacgacgttag 29521  T
Q  307 atgttacattagtatcttcatcatcttcatc 337  Q
    | |||||||| ||||||||| ||||||||||    
T  29522 acgttacattggtatcttcaccatcttcatc 29552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 12141 - 12214
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||| |||||    
T  12141 acccgtgctccgctcgggtttattgtaaagtgattgacatatgaataataaaatgcaatatgtaattgataacg 12214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 163396 - 163469
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacg 125  Q
    ||||||||||| |||||||||||||||||  |||||||||| | ||||||||||||||||| |||| |||||||    
T  163396 acccgtgctccactcgggtttattgtaaagggattgacatacgaataataaaatgcaatatgtaataggtaacg 163469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 13737 - 13661
Alignment:
Q  52 acccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaacggtg 128  Q
    |||||||||| ||||||||||| ||||||  ||||||||||  |||||||||||||| |||||||| ||||| ||||    
T  13737 acccgtgctcagctcgggtttaatgtaaagggattgacatacagataataaaatgcactatataataggtaatggtg 13661  T

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Target: scaffold0504 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 1346 - 1417
Alignment:
Q  53 cccgtgctccgctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||||||||||||||||||||||  |||||||| | | |||||||||| |||||||| || ||||||    
T  1346 cccgtgctccgctcgggtttattgtaaagggattgacaaacgaataataaaatacaatatatgataggtaac 1417  T

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Target: scaffold0090 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 12013 - 12054
Alignment:
Q  83 gattgacatatggataataaaatgcaatatataattggtaac 124  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  12013 gattgacatatgaataataaaatgcaatatataattgataac 12054  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 13480 - 13440
Alignment:
Q  84 attgacatatggataataaaatgcaatatataattggtaac 124  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  13480 attgacatacgaataataaaatgcaatatataattggtaac 13440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 16648 - 16594
Alignment:
Q  63 gctcgggtttattgtaaaacgattgacatatggataataaaatgcaatatataat 117  Q
    |||| ||||||||||| ||  ||||||||| | ||||||||||||||||||||||    
T  16648 gctcaggtttattgtacaataattgacatacgaataataaaatgcaatatataat 16594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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