View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_1 (Length: 573)
Name: NF0800_low_1
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 112 - 560
Target Start/End: Original strand, 33694867 - 33695316
Alignment:
| Q |
112 |
gtttaaactaaaccgaagtagtgtcaatttttatgattggctattgcggagaaaaactagtaagacttttcaagaatagtgacatgattaatgttgatgt |
211 |
Q |
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| T |
33694867 |
gtttaaactaaaccgaagtagtgtcaatttttatgattggctattgcggagaaaaactagtaagacttttcaagaatagtgacatgattaatgttgatgt |
33694966 |
T |
|
| Q |
212 |
tggcaaacgatatcattttctattaatacacatacctactcatcacatg----gagcaatagattaatggaacatttcatctaaattcgtagaatttatt |
307 |
Q |
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| T |
33694967 |
tggcaa-cgatatcattttctattaatacacatacctactcatcacatgcatggagcaatagattaatggaacatttcatctaaattcgtagaatttatt |
33695065 |
T |
|
| Q |
308 |
tttgaaa-gggttannnnnnnnnnnncagatcaacagacaaccctactatagcatcaaccgtaacaatcaatttatatataagctagctttcatcattta |
406 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33695066 |
tttgaaaagggttaggggggtgggggcagatcaacagacaaccctactatagcatcaaccgtaacaatcaatttatatataagctagctttcatcattta |
33695165 |
T |
|
| Q |
407 |
gttgtccttttctggaaatagtttatagtaacaccaatattgtggggataatttctcatataatccaccttaacacgtgattcaaaacagggtacacaaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33695166 |
gttgtccttttctggaaatagtttatagtaacacca---ttgtggggataatttctcatataatccaccttaacacgtgattcaaaacagggtacacaaa |
33695262 |
T |
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| Q |
507 |
aattagtggtggagaaacttgtgaaccacactgaatcctaaaacacaaggagta |
560 |
Q |
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| T |
33695263 |
aattagtggtggagaaaattgtgaaccacactgaatcctaaaacacaaggagta |
33695316 |
T |
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