View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0800_low_12 (Length: 339)
Name: NF0800_low_12
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 5117611 - 5117925
Alignment:
| Q |
1 |
tgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattcctt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5117611 |
tgatatgtgatgttaggttcaataccaaaggagattggccatctcaatcaacttcagcttctatttatgaaaaataacagcttgagtgggcctattcctt |
5117710 |
T |
|
| Q |
101 |
cacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5117711 |
cacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacct |
5117810 |
T |
|
| Q |
201 |
acaattcctccaaatgcatggaaacaaatttgttggaaaaattccaaatactatatccaatgcttcaaatctcttttcagttagctttagcaataatgaa |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5117811 |
acaattcctccaaatgtatggaaacaaatttgttggaaaaattccaaatactatatccaatgcttcaaatctcttttcagttagctttagcgataatgaa |
5117910 |
T |
|
| Q |
301 |
tttagtggaattatt |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5117911 |
tttagtggaattatt |
5117925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 5081934 - 5081662
Alignment:
| Q |
1 |
tgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattcctt |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||||||| || |||||||||| |
|
|
| T |
5081934 |
tgatatgtgattttaggttcgataccaatggagattggcagtctcaatcaacttcagcttctacaaatgggaaataacagcttgagcggacctattcctt |
5081835 |
T |
|
| Q |
101 |
cacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacct |
200 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
5081834 |
tgaaaatcttcaacatttcaacattggaatatttgcatcttgaacaaaattctttctcaggcatgcttccatcaaatctgggatttggccttcctaacct |
5081735 |
T |
|
| Q |
201 |
acaattcctccaaatgcatggaaacaaatttgttggaaaaattccaaatactatatccaatgcttcaaatctc |
273 |
Q |
| |
|
||| || || ||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5081734 |
acagcaactacacatgtacggaaacaagtttgttggaaaaattccaaatagtatatccaatgcttcaaatctc |
5081662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 5100052 - 5100322
Alignment:
| Q |
1 |
tgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattcctt |
100 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
5100052 |
tgatatttgattttaggttcgataccaatggagattggccatctcagtcaacttcaacttctactaatgggaaataacagcttgagtggacctattcctt |
5100151 |
T |
|
| Q |
101 |
cacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacct |
200 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||| |||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5100152 |
caaaagtcttcaacatttcaacattggaaattttgtatcttgatcaaaattctctctcaggcatgcttccatcaaatttgggatttggacttcctaacct |
5100251 |
T |
|
| Q |
201 |
acaattcctccaaatgcatggaaacaaatttgttggaaaaattccaaatactatatccaatgcttcaaatc |
271 |
Q |
| |
|
|||| || | || | ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5100252 |
acaacaactagacattttagcaaacagatttgttggaagaattccaaatagtatatccaatgcttcaaatc |
5100322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 14414239 - 14413925
Alignment:
| Q |
1 |
tgatatgtgatgttaggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattcctt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
14414239 |
tgatatgtgatgttaggttcgttaccaatggagattggccatctcaatcaacttcagattctacaaatgtggaataacaacttgagtggacctattcctt |
14414140 |
T |
|
| Q |
101 |
cacaagtcttcaacatttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacct |
200 |
Q |
| |
|
|| || |||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
14414139 |
caaaactcttcaacatttcaacattggaaaatttgtttcttggacaaaattctttctcaggcatgcttccatcaaatctcggatttggccttcctaacct |
14414040 |
T |
|
| Q |
201 |
acaattcctccaaatgcatggaaacaaatttgttggaaaaattccaaatactatatccaatgcttcaaatctcttttcagttagctttagcaataatgaa |
300 |
Q |
| |
|
|| | | || | ||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||| |||||||| |
|
|
| T |
14414039 |
acgagtactacgcatgtatggaaacaagtttgttggaaaaattccaaatagtatatccaatgcttcaaatcttgttgcagttagccttagtgataatgaa |
14413940 |
T |
|
| Q |
301 |
tttagtggaattatt |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14413939 |
cttagtggaattatt |
14413925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 16884334 - 16884595
Alignment:
| Q |
14 |
taggtttcataccaatggagattggccatctcaatcaacttcagtttctatatatgaaaaataacagcttgagtgggcctattccttcacaagtcttcaa |
113 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||| ||||| ||||| | ||| |||||||||||||||||| | | ||||||| || ||||||| |
|
|
| T |
16884334 |
taggtttgatacctatggagattggcaatctcaatcaaattcaggttctacaaatgggaaataacagcttgagtggacatgttccttctaaactcttcaa |
16884433 |
T |
|
| Q |
114 |
catttcaacattgaaatatttgcgtcttgaactaaattctttctcaggcatgcttccatcaaattttggatttggacttcctaacctacaattcctccaa |
213 |
Q |
| |
|
||||||||||||| || |||||| |||||| ||||||||| ||||||||||||||||| | ||| | ||| |||| |||||||| |||||| || || |
|
|
| T |
16884434 |
catttcaacattggaacatttgcatcttgagctaaattctctctcaggcatgcttccacccaatatgggacttggccttcctaatctacaagagctgcac |
16884533 |
T |
|
| Q |
214 |
atgcatggaaacaaatttgttggaaaaattccaaatactatatccaatgcttcaaatctctt |
275 |
Q |
| |
|
||| | ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16884534 |
atgtacaaaaacaaatttgttgggaaaattccaaatagtatatccaatgcttcaaacctctt |
16884595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5174 times since January 2019
Visitors: 5755