View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_13 (Length: 316)
Name: NF0800_low_13
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_13 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 28753749 - 28753471
Alignment:
| Q |
15 |
gacagccacaaggaaattcagtaacaagaaagcatcttcatcaacaactcctaaagctcctaaatcaggattgagtagaaagcaagcaattgaagaggtt |
114 |
Q |
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| T |
28753749 |
gacagccacaaggaaattcagtaacaagaaagcatcttcatcaacaactcctaaagctcctaaatcaggattgagtagaaagcaagcaattgaagaggtt |
28753650 |
T |
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| Q |
115 |
gataaacttcagaaacagattctagcattacaaactgtgaaagagtttctgaaaagctcttatgataattccattgctaaatattgggatactgagggac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753649 |
gataaacttcagaaacagattctagcattacaaactgtgaaagagtttctgaaaagctcttatgataattccattgctaaatattgggatactgagggac |
28753550 |
T |
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| Q |
215 |
agattaaggaattacaagagagagtttccaatttgcaagacgaacttggtgaaggtgttgttaatgttattgatgatga |
293 |
Q |
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| T |
28753549 |
agattaaggaattgcaagagagagtttccaatttgcaagacgaacttggtgaaggtgttgttaatgttattgatgatga |
28753471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 242
Target Start/End: Complemental strand, 13750121 - 13749951
Alignment:
| Q |
72 |
tcctaaatcaggattgagtagaaagcaagcaattgaagaggttgataaacttcagaaacagattctagcattacaaactgtgaaagagtttctgaaaagc |
171 |
Q |
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||||||||| |||||||| |||||| ||||| ||||||||||| || || |||||||||||| || | ||||||| ||||| ||||| |||||||| |
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| T |
13750121 |
tcctaaatctggattgagcagaaaggaagcacttgaagaggttagcaagctacagaaacagattttatctctacaaacggtgaaggagttcgtgaaaagc |
13750022 |
T |
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| Q |
172 |
tcttatgataattccattgctaaatattgggatactgagggacagattaaggaattacaagagagagtttc |
242 |
Q |
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| T |
13750021 |
tcgtatgataattccattgctaggtactgggaaactgaagataagatcaaggaattacaagagaaagtttc |
13749951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 140732 - 140656
Alignment:
| Q |
83 |
gattgagtagaaagcaagcaattgaagaggttgataaacttcagaaacagattctagcattacaaactgtgaaagag |
159 |
Q |
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|||| ||||||||||| | ||||||||||||||| | | ||||| ||| ||||||||||||||||| |||||||| |
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| T |
140732 |
gattaagtagaaagcaggaaattgaagaggttgacacgttccagaagcagcttctagcattacaaactctgaaagag |
140656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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