View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0800_low_14 (Length: 271)

Name: NF0800_low_14
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0800_low_14
NF0800_low_14
[»] chr2 (1 HSPs)
chr2 (32-229)||(4081144-4081337)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 4081144 - 4081337
Alignment:
Q  32 aaacctaattaactactatcatccacattaaaacttccctaccagtatgtatctaatatggatttcctccaactcaataaatcaaaaagttatctattta 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4081144 aaacctaattaactactatcatccacattaaaacttccttaccagtat----ctaatatggatttcctccaactcaataaatcaaaaagttatctattta 4081239  T
Q  132 acatgtcaatgcaacaattatctgtctgaataagattaatgaaataaaacaattagaatgctccattatgtcctaaactatcttattgtaaggttcaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4081240 acatgtcaatgcaacaattatctgtctgaataagattaatgaaataaaacaattagaatgctccattatgtcctaaactatcttattgtaaggttcaa 4081337  T

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