View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_21 (Length: 206)
Name: NF0800_low_21
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30623923 - 30624009
Alignment:
| Q |
1 |
attggagaagatcatcagtaccaaatccatagatgtcaatcttttctaaatgaccagaacttaggtcaacagcatattgacaaagat |
87 |
Q |
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| T |
30623923 |
attggagaagatcatcagtaccaaatccatagatatcaatcttttctaaatgaccagaacttaggtcaacagcatattgacaaagat |
30624009 |
T |
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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38284704 - 38284620
Alignment:
| Q |
1 |
attggagaagatcatcagtaccaaatccatagatgtcaatcttttctaaatgaccagaacttaggtcaacagcatattgacaaag |
85 |
Q |
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| T |
38284704 |
attggagaagatgatcagaaccaaatctataaatatcaattttttctaaatgaccagaacttagatcaacagcatattgacaaag |
38284620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40892353 - 40892437
Alignment:
| Q |
1 |
attggagaagatcatcagtaccaaatccatagatgtcaatcttttctaaatgaccagaacttaggtcaacagcatattgacaaag |
85 |
Q |
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|||||||||||||||| || |||| | ||| || ||| | ||||||||||| ||||||||||| |||||||| || |||||||| |
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| T |
40892353 |
attggagaagatcatcggtggcaaaacaataaatatcatttttttctaaatggccagaacttagatcaacagcgtactgacaaag |
40892437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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