View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_3 (Length: 486)
Name: NF0800_low_3
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 352
Target Start/End: Original strand, 18324532 - 18324870
Alignment:
| Q |
14 |
agagagggtaaggattgagacaaacctgtttagtgccgccttggccatctggtagagggtggcttgaacagatgggctatagaccccttcctttggagag |
113 |
Q |
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| T |
18324532 |
agagagggtaaggattgagacaaacctgtttaatgctgccttcgccatctggtagagggtggcttgaactgatgggctatagaccccttcctttggagag |
18324631 |
T |
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| Q |
114 |
ccaaaaaatgtgtcaagcaaaactcttttcacatccaggtacttttctgtaaaataaagaggcttcttggggacgctatataacgattcatatgaatacc |
213 |
Q |
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| T |
18324632 |
ccaaaaaatgtgtcaagcaaaactcttttcacatccaggtacttttctgtaaaataaagaggcttcttggggacgctatataacgattcatatgaatacc |
18324731 |
T |
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| Q |
214 |
tacaaccgcattcaatttagaagaatgaattctattctactagttaaatagaacacatgtccaatgatttccttagttggaggatgtgctacaaatttcc |
313 |
Q |
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| T |
18324732 |
tacaaccgcattcaatttagaagaatgaattctattctactagttaaatagaacacatgtacaatgatttccttagttggaggatgtgctacaaatttcc |
18324831 |
T |
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| Q |
314 |
accaaataatgaatgaaaagaaaattttctagaaattgt |
352 |
Q |
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| T |
18324832 |
accaaataatgaatgaaaagaaaattttctagaaattgt |
18324870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 349 - 472
Target Start/End: Original strand, 45047814 - 45047937
Alignment:
| Q |
349 |
ttgtgtgcaatttctcgagcttaatcaaagacgaattgaatgaagcccgtatgaatcttagtagacaatattctcatgaatattggccacccaaaattct |
448 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |
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| T |
45047814 |
ttgtttgcaatttctcgagcttgatcaaagacgaattgaatgaagcccgtatgaatcttagtaggcaatattctaatgaatattggccagccaaaattct |
45047913 |
T |
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| Q |
449 |
agccactatgacacttttggattc |
472 |
Q |
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| T |
45047914 |
atccactatgacacttttggattc |
45047937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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