View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0800_low_4 (Length: 483)

Name: NF0800_low_4
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0800_low_4
NF0800_low_4
[»] chr4 (10 HSPs)
chr4 (174-463)||(53355512-53355798)
chr4 (174-463)||(19995414-19995703)
chr4 (174-461)||(55948294-55948582)
chr4 (174-461)||(44252021-44252307)
chr4 (177-410)||(39653596-39653829)
chr4 (67-131)||(19995745-19995809)
chr4 (67-131)||(44251908-44251972)
chr4 (67-131)||(53355404-53355468)
chr4 (67-130)||(55948631-55948691)
chr4 (70-127)||(39653499-39653556)
[»] chr1 (14 HSPs)
chr1 (174-463)||(33258274-33258561)
chr1 (174-463)||(33278446-33278733)
chr1 (174-463)||(28920006-28920294)
chr1 (174-461)||(7654621-7654907)
chr1 (174-461)||(36146278-36146562)
chr1 (174-461)||(19056700-19056986)
chr1 (175-404)||(24088702-24088933)
chr1 (67-131)||(19056589-19056653)
chr1 (67-131)||(33258167-33258231)
chr1 (67-131)||(33278339-33278403)
chr1 (67-126)||(28920348-28920407)
chr1 (71-131)||(36146607-36146664)
chr1 (67-110)||(7654959-7655002)
chr1 (70-131)||(24088976-24089037)
[»] chr8 (4 HSPs)
chr8 (174-461)||(25264753-25265038)
chr8 (174-461)||(33294787-33295073)
chr8 (67-131)||(33295119-33295183)
chr8 (67-131)||(25264643-25264707)
[»] chr3 (4 HSPs)
chr3 (174-463)||(33733875-33734165)
chr3 (174-461)||(53528391-53528678)
chr3 (67-131)||(33734208-33734272)
chr3 (67-131)||(53528277-53528338)
[»] chr7 (15 HSPs)
chr7 (174-461)||(45276820-45277105)
chr7 (174-461)||(31392990-31393275)
chr7 (174-460)||(8230954-8231239)
chr7 (174-463)||(21715994-21716266)
chr7 (174-459)||(32882053-32882336)
chr7 (174-461)||(40028886-40029155)
chr7 (67-131)||(8231304-8231368)
chr7 (67-131)||(32882388-32882452)
chr7 (67-131)||(40028779-40028843)
chr7 (67-131)||(45276713-45276777)
chr7 (67-131)||(21716311-21716375)
chr7 (67-131)||(31393333-31393397)
chr7 (70-113)||(18852410-18852453)
chr7 (317-405)||(14108686-14108774)
chr7 (317-405)||(14418643-14418731)
[»] chr2 (9 HSPs)
chr2 (175-463)||(1841106-1841392)
chr2 (71-131)||(1841442-1841502)
chr2 (67-131)||(13948268-13948332)
chr2 (67-131)||(14089475-14089539)
chr2 (174-226)||(13948172-13948224)
chr2 (174-226)||(14089379-14089431)
chr2 (274-309)||(13948138-13948173)
chr2 (274-309)||(14089345-14089380)
chr2 (70-131)||(40745829-40745890)
[»] chr5 (8 HSPs)
chr5 (174-463)||(1417826-1418114)
chr5 (175-463)||(30333368-30333652)
chr5 (174-461)||(25915108-25915398)
chr5 (67-131)||(1417716-1417780)
chr5 (67-131)||(25914793-25914857)
chr5 (67-126)||(30333704-30333763)
chr5 (70-131)||(4743947-4744008)
chr5 (69-113)||(27914912-27914956)
[»] chr6 (3 HSPs)
chr6 (256-463)||(19083512-19083719)
chr6 (174-228)||(19083725-19083779)
chr6 (67-111)||(19083831-19083875)
[»] scaffold0489 (3 HSPs)
scaffold0489 (256-463)||(6251-6462)
scaffold0489 (67-130)||(6569-6632)
scaffold0489 (174-228)||(6468-6522)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 174 - 463
Target Start/End: Original strand, 53355512 - 53355798
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53355512 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 53355611  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53355612 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 53355711  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  53355712 attcacaaaattctcaaattgaaaaacctaaagaatga---tttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 53355798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 174 - 463
Target Start/End: Complemental strand, 19995703 - 19995414
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19995703 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 19995604  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19995603 aatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcaaattcccaatattgaaaaa 19995504  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  19995503 attcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 19995414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 174 - 461
Target Start/End: Complemental strand, 55948582 - 55948294
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  55948582 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatctccattgacaatggtcagattgacatctcaacactaaaatccac 55948483  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55948482 aatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatactcgaattcccaatattgaaaaa 55948383  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  55948382 attcacaaaattctcaaattgaaaaacctaaagaatgattttttgttttcattaccaactctcgtctcatcattgatctcgcatctctg 55948294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 44252021 - 44252307
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44252021 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 44252120  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44252121 aatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgatcgaattcccaatattgaaaaa 44252220  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    |||||||||||||||||||| |||||||||||||||||          ||||||||||||| ||||||||||||||||||||||||||    
T  44252221 attcacaaaattctcaaattaaaaaacctaaagaatga-tttttttttcattaccaactcttgtctcatcattgatctcgcatctctg 44252307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 177 - 410
Target Start/End: Original strand, 39653596 - 39653829
Alignment:
Q  177 aaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccacaat 276  Q
    |||||| |||| || | ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||    
T  39653596 aaaatcgtcatctcgccctcaatagacaacatctcacaaacccaaacaaaatccccattgataatggtcagattgacgcctcaacactaaaatccacaat 39653695  T
Q  277 gttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaatt 376  Q
    ||||||||||||||| ||| | ||||||||||||||  |||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||    
T  39653696 gttcatagtcccaacaaaattcttattgataatatcataatcaaattataacaacaaagtcctcattgagaatgctcaaattctcaatattgaaaaaatt 39653795  T
Q  377 cacaaaattctcaaattgaaaaacctaaagaatg 410  Q
    ||||||| |  |||||||||||||||||||||||    
T  39653796 cacaaaacttccaaattgaaaaacctaaagaatg 39653829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 19995809 - 19995745
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19995809 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 19995745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 44251908 - 44251972
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44251908 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 44251972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 53355404 - 53355468
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53355404 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 53355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 55948691 - 55948631
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  55948691 tagctttcttcatcttcttccttccacctcttttacatcttcatc---gtcttcataaattcat 55948631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 39653499 - 39653556
Alignment:
Q  70 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaatt 127  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||    
T  39653499 ctttcttcatcttcttcattccacctttttttcatcttcatcattatcttcataaatt 39653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 174 - 463
Target Start/End: Original strand, 33258274 - 33258561
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33258274 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 33258373  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258374 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 33258473  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    |||||||||| |||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  33258474 attcacaaaactctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 33258561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 174 - 463
Target Start/End: Original strand, 33278446 - 33278733
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33278446 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 33278545  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33278546 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 33278645  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    |||||||||| |||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  33278646 attcacaaaactctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 33278733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 174 - 463
Target Start/End: Complemental strand, 28920294 - 28920006
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||    
T  28920294 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaacccccattgacaatgatcagattgaaatctcaacactaaaatccac 28920195  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28920194 aatgttcatagtccca-ctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaatttccaatattgaaaaa 28920096  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  28920095 attcacaaaattctcaaattgaaaaacctaaagaatgatgttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 28920006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 174 - 461
Target Start/End: Complemental strand, 7654907 - 7654621
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7654907 ctcaaaatcatcatctcactctcaatagacaacttttcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 7654808  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  7654807 aatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatactcgaattcccaatattga-aaa 7654709  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    |||||||||||||| |||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  7654708 attcacaaaattcttaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 7654621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 174 - 461
Target Start/End: Complemental strand, 36146562 - 36146278
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36146562 ctcaaaatcatcatctcactctcaatagacaacttttcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 36146463  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||    
T  36146462 aatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataataacaaaatcctcattgtgaatactcgaattcccaatattga-aaa 36146364  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  36146363 attcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 36146278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 19056700 - 19056986
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||    
T  19056700 ctcaaaatcatcatctcactctcaatagacaacttctgacaaacctaaacaaaattcccattgataatggtcagattgacatctcaacactaaaatctac 19056799  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  19056800 aatgttcacagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcaaatttccaatattgaaaaa 19056899  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||| ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  19056900 attcaaaaaattctcaaattgaaaaacctaaagaatga-tttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 19056986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 175 - 404
Target Start/End: Complemental strand, 24088933 - 24088702
Alignment:
Q  175 tcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccaca 274  Q
    |||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | |||||||| ||| |||||| |||||||||||| ||||||||||    
T  24088933 tcaaaatcatcatatcatcctcaatacacaacttctcacaaacctaaacaaaattctcattgacagtggacagattgacatctcaacaccaaaatccaca 24088834  T
Q  275 atgttc--atagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaa 372  Q
    |||| |  ||||||| ||| ||||| ||||||||||||||  |||||||||||||||| ||||||||||||  ||||||| ||||||||||| |||||||    
T  24088833 atgtccatatagtcctaacaaaactcttattgataatatcataatcaaattataacaaaaaaatcctcattaagaatgcttgaattcccaattttgaaaa 24088734  T
Q  373 aattcacaaaattctcaaattgaaaaacctaa 404  Q
    ||||   |||||||  ||||||||||||||||    
T  24088733 aattacgaaaattccaaaattgaaaaacctaa 24088702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 19056589 - 19056653
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19056589 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 19056653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 33258167 - 33258231
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258167 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33258231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 33278339 - 33278403
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33278339 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33278403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 28920407 - 28920348
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaat 126  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28920407 tagctttcttcatcttcttcctttcacctcttttacatcttcatcattgtcttcataaat 28920348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 36146664 - 36146607
Alignment:
Q  71 tttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  36146664 tttcttcatcttcttccttccacctcttttacatcttcatc---gtcttcataaattcatc 36146607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 7655002 - 7654959
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7655002 tagctttcttcatcttcttccttccacctcttttacatcttcat 7654959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 24089037 - 24088976
Alignment:
Q  70 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||| |||| ||||||| ||||||||| ||| || |||||||||||||    
T  24089037 ctttcttcatcttcttccgtccatctctttttcatcttcattattatcatcataaattcatc 24088976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 25264753 - 25265038
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  25264753 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaaaatccac 25264852  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25264853 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 25264952  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  25264953 attcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 25265038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 174 - 461
Target Start/End: Complemental strand, 33295073 - 33294787
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33295073 ctcaaaatcatcatctcactctcaatagacaacttctcataaacccaaacaaaatccccattgataatggtcagattaacatctcaacactaaaatccac 33294974  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33294973 aatgttcatagtcccaactaaacttttattaataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattaaaaaa 33294874  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  33294873 attcacaaaattctcaaattgaaaaacctaaagaatga-tttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 33294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 33295183 - 33295119
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33295183 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33295119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 25264643 - 25264707
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25264643 tagctttcttcatcttcttccttccacctctttaacatcttcatcattgtcttcataaattcatc 25264707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 174 - 463
Target Start/End: Complemental strand, 33734165 - 33733875
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33734165 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 33734066  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33734065 aatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 33733966  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    ||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||    
T  33733965 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 33733875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 53528391 - 53528678
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  53528391 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaattccaattgacaatggtcagattgacatctcaacactaaaatccac 53528490  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53528491 aatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 53528590  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  53528591 attcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 53528678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 33734272 - 33734208
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33734272 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33734208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 53528277 - 53528338
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  53528277 tagctttcttcatcttcttccttccacctcttttacatcttcatc---gtcttcataaattcatc 53528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 45276820 - 45277105
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  45276820 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatcttaacactaaaatccac 45276919  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45276920 aatgttcatagtcccaactaaaattttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 45277019  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  45277020 attcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 45277105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 174 - 461
Target Start/End: Complemental strand, 31393275 - 31392990
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31393275 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 31393176  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31393175 aatgttcatagtctcaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaatttccaatattgaaaaa 31393076  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  31393075 attcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 31392990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 174 - 460
Target Start/End: Complemental strand, 8231239 - 8230954
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||    
T  8231239 ctcaaaatcatcatctcattctcaatagacaacttctcacaaacccaaacaaaatctccattgacaatggtcagattgacatctcaacactaaaattcac 8231140  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8231139 aatgttcatagtctcaaataaacttttattgttaatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 8231040  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctct 460  Q
    ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  8231039 attcacaaaattctcaaattgaaaaacctaaagaatga-tttttttttcattaccaactctcgtctcatcattgatctcgcatctct 8230954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 174 - 463
Target Start/End: Complemental strand, 21716266 - 21715994
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  21716266 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaaaatccac 21716167  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21716166 aa---------------ctaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 21716082  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  21716081 attcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 21715994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 174 - 459
Target Start/End: Complemental strand, 32882336 - 32882053
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||    
T  32882336 ctcaaaatcatcatctcactctcaatggacaacttctcacaaactcaaacaaaa-ccccattgactatggtcaaattgacatctcaacactaaaatccac 32882238  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32882237 aatgttcatagtccgaactaattttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaactcccaatattgaaaaa 32882138  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctc 459  Q
    |||||||||||||| |||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||||||    
T  32882137 attcacaaaattctaaaattgaaaaacctaaagaatga-tttttttttcattacaaactctcgtctcatcattgatctcgcatctc 32882053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 40028886 - 40029155
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  40028886 ctcaaaatcatcatctcactctcaatagacaacttctcacaaaaccaaacaaaatcctcattgacaatggtcagattgacatctcaacactaaaatccac 40028985  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    ||||||||                  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  40028986 aatgttca------------------tattgataatatcaaaatcaaattataacaacaaaatcctcattatgaatgctcgaatttccaatattg-aaaa 40029066  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||| ||||||||    
T  40029067 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttttcattaccaactctcgtctcatcattgatctcacatctctg 40029155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 8231368 - 8231304
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8231368 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 8231304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 32882452 - 32882388
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32882452 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 32882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 40028779 - 40028843
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40028779 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 40028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 45276713 - 45276777
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45276713 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 45276777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 21716375 - 21716311
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21716375 tagctttcttcatcttcttccttccacctctttaacatcttcatcattgtcttcataaattcatc 21716311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 31393397 - 31393333
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31393397 tagctttcttcatcttcttccttccacctcttttacatctccatcattgtcttcataaattcatc 31393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 18852453 - 18852410
Alignment:
Q  70 ctttcttcatcttcttccttccacctcttttacatcttcatcat 113  Q
    |||||||||||||||||||| |||||||| | ||||||||||||    
T  18852453 ctttcttcatcttcttcctttcacctcttcttcatcttcatcat 18852410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 14108774 - 14108686
Alignment:
Q  317 tcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaa 405  Q
    |||||||| ||||||||||| | || || |||||| |  ||||||||| ||||| ||||| | ||||||| | |||| |||||||||||    
T  14108774 tcaaattacaacaacaaaattcccaatgagaatgcccagattcccaattttgaagaaatttataaaattccctaattaaaaaacctaaa 14108686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 14418731 - 14418643
Alignment:
Q  317 tcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaa 405  Q
    |||||||| ||||||||||| | || || |||||| |  ||||||||| ||||| ||||| | ||||||| | |||| |||||||||||    
T  14418731 tcaaattacaacaacaaaattcccaatgagaatgcccagattcccaattttgaagaaatttataaaattccctaattaaaaaacctaaa 14418643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 175 - 463
Target Start/End: Complemental strand, 1841392 - 1841106
Alignment:
Q  175 tcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccaca 274  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841392 tcaaaatcatcatctcactctcaatagacaacttctcacaaacctaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccaca 1841293  T
Q  275 atgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaa 374  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1841292 atgttcatagtcccaactaaacttttattgataatatcaaaataaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaacaa 1841193  T
Q  375 ttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    |||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  1841192 ttcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 1841106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 1841502 - 1841442
Alignment:
Q  71 tttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841502 tttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 1841442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 13948332 - 13948268
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13948332 tagctttcttcatcttcttccctccacctcttttacatcttcatcattgtcttcataaattcatc 13948268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 14089539 - 14089475
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14089539 tagctttcttcatcttcttccctccacctcttttacatcttcatcattgtcttcataaattcatc 14089475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 13948224 - 13948172
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaa 226  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13948224 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaa 13948172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 14089431 - 14089379
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaa 226  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14089431 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaa 14089379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 13948173 - 13948138
Alignment:
Q  274 aatgttcatagtcccaactaaacttttattgataat 309  Q
    |||||||||||||||||||||| |||||||||||||    
T  13948173 aatgttcatagtcccaactaaatttttattgataat 13948138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 14089380 - 14089345
Alignment:
Q  274 aatgttcatagtcccaactaaacttttattgataat 309  Q
    |||||||||||||||||||||| |||||||||||||    
T  14089380 aatgttcatagtcccaactaaatttttattgataat 14089345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 40745890 - 40745829
Alignment:
Q  70 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||| ||| |||||| | |||||||||||   | ||||||||||||||    
T  40745890 ctttcttcatcttcttccctcctcctcttctccatcttcatcaccatattcataaattcatc 40745829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 174 - 463
Target Start/End: Original strand, 1417826 - 1418114
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1417826 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaatcaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 1417925  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1417926 aatgttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcactgtgaatgctcgaattcccaatattgaaaaa 1418025  T
Q  374 attcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  1418026 attcacaaaattctcaaattgaaaaacctaaagaatga-tttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 1418114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 175 - 463
Target Start/End: Complemental strand, 30333652 - 30333368
Alignment:
Q  175 tcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccaca 274  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  30333652 tcaaaatcatcatctccctctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaaaatccaca 30333553  T
Q  275 atgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaa 374  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30333552 atgttcatagtccc-actaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattg-aaaaa 30333455  T
Q  375 ttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct 463  Q
    |||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  30333454 ttcacaaaattctcaaattgaaaaacctaaagaatga--ttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 30333368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 174 - 461
Target Start/End: Original strand, 25915108 - 25915398
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccac 273  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25915108 ctcaaaatcatcatctcactctcaatagacaacttcccacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 25915207  T
Q  274 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 373  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25915208 aatgttcatagtcccagctaaacttttattgataatatcaaaatcaaatcataacaacaaaatcctcattgtgaatgctcaaattcccaatattgaaaaa 25915307  T
Q  374 attcacaaaattctcaaattg-aaaaacctaaagaatga--nnnnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg 461  Q
    ||||||||||||||||||||| |||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  25915308 attcacaaaattctcaaattgaaaaaacctaaagaatgattttttttttctcattaccaactctcgtctcatcattgatctcgcatctctg 25915398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 1417716 - 1417780
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1417716 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 1417780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 25914793 - 25914857
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25914793 tagctttcttcatcttcttccttccacctcttttacatattcatcattgtcttcataaattcatc 25914857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 30333763 - 30333704
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaat 126  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30333763 tagctttcttcatcttcttccttccacctcttatacatcttcatcattgtcttcataaat 30333704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 4744008 - 4743947
Alignment:
Q  70 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 131  Q
    |||||||||||||||||| ||| |||||| | |||||||||||   |||||||| |||||||    
T  4744008 ctttcttcatcttcttccctcctcctcttctccatcttcatcaccatcttcatacattcatc 4743947  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 27914956 - 27914912
Alignment:
Q  69 gctttcttcatcttcttccttccacctcttttacatcttcatcat 113  Q
    ||||||||||||||||||||| |||||||| | |||||| |||||    
T  27914956 gctttcttcatcttcttcctttcacctcttcttcatcttaatcat 27914912  T

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Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 256 - 463
Target Start/End: Complemental strand, 19083719 - 19083512
Alignment:
Q  256 ctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcga 355  Q
    |||||||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19083719 ctcaacactaaaatccacaatgttcatagtcataaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcga 19083620  T
Q  356 attcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnnncattaccaactctcgtctcatcattgatctcgca 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  19083619 attcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgca 19083520  T
Q  456 tctctgct 463  Q
    ||||||||    
T  19083519 tctctgct 19083512  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 19083779 - 19083725
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaat 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  19083779 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaatcaaaat 19083725  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 19083875 - 19083831
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19083875 tagctttcttcatcttcttccttccacctcttttacatcttcatc 19083831  T

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Target: scaffold0489 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 256 - 463
Target Start/End: Complemental strand, 6462 - 6251
Alignment:
Q  256 ctcaacactaaaatccacaatgttcatagtc-ccaactaaac-ttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctc 353  Q
    |||||||||||||||||||||||||||||||   || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6462 ctcaacactaaaatccacaatgttcatagtcataaattaaactttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctc 6363  T
Q  354 gaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnnnncattaccaactctcgtctcatcattgatct 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||    
T  6362 gaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttttcattaccaactctcgtctcatcattgatct 6263  T
Q  452 cgcatctctgct 463  Q
    ||||||||||||    
T  6262 cgcatctctgct 6251  T

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Target: scaffold0489; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 6632 - 6569
Alignment:
Q  67 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6632 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcat 6569  T

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Target: scaffold0489; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 6522 - 6468
Alignment:
Q  174 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaat 228  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  6522 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaatcaaaat 6468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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