View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_7 (Length: 448)
Name: NF0800_low_7
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 97 - 437
Target Start/End: Original strand, 51262749 - 51263095
Alignment:
| Q |
97 |
gttgttgttgcagaagatgaactcaaagattccatcatcatcaagattgattctcaatctcaaaaattgcacaaaataaaa-----cacctcctgtcttc |
191 |
Q |
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| T |
51262749 |
gttgttgttgcagaagatgaactcaaagattccatcatcatcaagattgattctcaatctcaaaaattgcacaaaacaaaatataacacctcctgtcttc |
51262848 |
T |
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| Q |
192 |
acctcaaaaatatcccgacacaaacacaacaatacaccgcaaataatatttatattaaatattagtacttacttaatacataaaattcttttttaagacc |
291 |
Q |
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| T |
51262849 |
acctcaaaaatatcccgacacaaacacagcaatacaccgcaaataatatttatattaaatattagtccttacttaatacataaaattcttttttaagacc |
51262948 |
T |
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| Q |
292 |
cgatatcttccaaataattttagagtt-aaattcaaatcc-aagaccttgattnnnnnnnnnnnnnnnngagtccttacaccatctttaatgagagaatt |
389 |
Q |
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| T |
51262949 |
caatatcttccaaataattttagtgttaaaattcaaatccaaagacctt-agttaaagaacactaaaaaaagtccttacaccatctttaatgggagagtt |
51263047 |
T |
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| Q |
390 |
ttaaacatttaagatttattgcatattagatgctccattggcacctat |
437 |
Q |
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| T |
51263048 |
ttaaatatttaagattcattgcctattagatgctccattgacacctat |
51263095 |
T |
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