View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_8 (Length: 407)
Name: NF0800_low_8
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 44958865 - 44958491
Alignment:
| Q |
5 |
ccatgttcataatggtcttttcctcctcttcatcaaacattatgtatagatgtgaatggtgaagtgatctcatgttgaattcccatctcatcaaagaaat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44958865 |
ccatgttcataatggtcttttcctcctcttcatcaaacattatgtatagatgtgaatggtgaagtgatctcatgttgaattcccatctcatcaaaaaaat |
44958766 |
T |
|
| Q |
105 |
tctccaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttctttttcaactaatactttgaacttattgaagaca |
204 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958765 |
tctctaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttctttttcaactaatactttgaacttattgaagaca |
44958666 |
T |
|
| Q |
205 |
tgaaacacttcatctttagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgagacaatgtacctattccctcacaatgaaaatg |
304 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958665 |
tgaaacacttcatctctagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgagacaatgtacctattccctcacaatgaaaatg |
44958566 |
T |
|
| Q |
305 |
tatcaaatggtccactaacatcttattaaaccacatcaagctttgccctcactggaatacgagaaacaaatgagt |
379 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
44958565 |
tatcaaatggtccactaacatcttattaaaccacatcaagctttgccctcattggaatatgagaaacaaatgagt |
44958491 |
T |
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