View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0800_low_9 (Length: 393)
Name: NF0800_low_9
Description: NF0800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0800_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 45552959 - 45552607
Alignment:
| Q |
30 |
ataagaccatcctcaatgaaggagtcttaaacttttaagatttggtacctgttatataccctcgttggggagaaaagttgttcggatcttgcagcttaaa |
129 |
Q |
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| T |
45552959 |
ataagaccatcttcaatgaaggagtcttaatcttttaagatttggtacctgttatataccctcattggggagaaaagttgttgggatcttgcagcttaaa |
45552860 |
T |
|
| Q |
130 |
aataccgaaaacatcatttgttgtaaggctgttgttgaaacttaaacaaaccaatccaaactttcctataccataaactataaactattgtataagtttt |
229 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552859 |
aataccaaaaacatcatttgttgtaaggctgttgttgaaacgtaaacaaaccaatccaaactttcctataccataaactataaactattgtataagtttt |
45552760 |
T |
|
| Q |
230 |
ccgaacaaccaatctaaatcagaaaacatatgatatgatttatcaacaccatattcaaactgaaaaacatacaatttgttcaaaacctttcaaaacgctc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552759 |
ccgaacaaccaatctaaatcagaaaacatatgatatgatttatcaacaccatattcaaactgaaaaacatacaatttgttcaaaacctttcaaaacgctc |
45552660 |
T |
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| Q |
330 |
acaatgtggagggacttcccatcactcccttcctctcttcctctctacttcat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552659 |
acaatgtggagggacttcccatcactcccttcctctcttcctctctacttcat |
45552607 |
T |
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