View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0801_low_14 (Length: 225)
Name: NF0801_low_14
Description: NF0801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0801_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 28081777 - 28081648
Alignment:
| Q |
5 |
tctaaaataagctaacagaaagtactagtactagctaaaaatataactaagaaaaaggaacataataactt-cgacnnnnnnnttccagaaaatttaatc |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28081777 |
tctaaaataagctaacaaaaagtactagtactagctaaaaatataactaagaaaaaggaacataataacttgagacaaaaaaattccagaaaatttaatc |
28081678 |
T |
|
| Q |
104 |
tccttgtgcatcaccaattttggaagaaag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28081677 |
tccttgtgcatcaccaattttggaagaaag |
28081648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6213 times since January 2019
Visitors: 5763