View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0801_low_17 (Length: 201)

Name: NF0801_low_17
Description: NF0801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0801_low_17
NF0801_low_17
[»] chr3 (10 HSPs)
chr3 (5-114)||(2364680-2364789)
chr3 (5-107)||(10323199-10323301)
chr3 (5-107)||(34332443-34332545)
chr3 (5-107)||(19919857-19919959)
chr3 (5-107)||(17097505-17097607)
chr3 (5-107)||(48569667-48569769)
chr3 (5-107)||(15312991-15313094)
chr3 (5-104)||(16179360-16179459)
chr3 (5-107)||(12341883-12341985)
chr3 (47-114)||(20531720-20531787)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-107)||(105471-105573)
[»] chr7 (8 HSPs)
chr7 (5-107)||(4937756-4937858)
chr7 (5-105)||(11276876-11276976)
chr7 (5-107)||(17721045-17721147)
chr7 (5-105)||(29968386-29968486)
chr7 (5-105)||(47877395-47877495)
chr7 (5-105)||(235066-235166)
chr7 (5-107)||(31423012-31423114)
chr7 (5-105)||(37255170-37255270)
[»] chr4 (14 HSPs)
chr4 (5-107)||(23642219-23642321)
chr4 (5-107)||(47419214-47419316)
chr4 (5-105)||(1828168-1828268)
chr4 (7-105)||(15740633-15740730)
chr4 (5-105)||(19755679-19755779)
chr4 (5-105)||(19784027-19784127)
chr4 (5-67)||(23647877-23647939)
chr4 (5-107)||(5789720-5789822)
chr4 (5-107)||(54482787-54482889)
chr4 (5-107)||(2821662-2821764)
chr4 (5-107)||(48312504-48312606)
chr4 (4-107)||(55725333-55725436)
chr4 (5-116)||(11586826-11586937)
chr4 (5-107)||(19735363-19735465)
[»] chr1 (5 HSPs)
chr1 (5-107)||(6051013-6051115)
chr1 (5-107)||(35541459-35541561)
chr1 (5-107)||(11908733-11908835)
chr1 (5-107)||(43388775-43388877)
chr1 (5-114)||(47622705-47622814)
[»] chr8 (13 HSPs)
chr8 (5-107)||(8300213-8300315)
chr8 (5-116)||(7924787-7924898)
chr8 (5-107)||(9923011-9923113)
chr8 (5-105)||(32266974-32267074)
chr8 (5-105)||(41664996-41665097)
chr8 (5-107)||(13879115-13879217)
chr8 (5-107)||(17699890-17699992)
chr8 (5-107)||(25090797-25090899)
chr8 (5-107)||(20824709-20824811)
chr8 (5-54)||(172667-172716)
chr8 (5-107)||(43270862-43270964)
chr8 (5-107)||(42177180-42177279)
chr8 (56-105)||(13396800-13396849)
[»] chr5 (14 HSPs)
chr5 (5-107)||(42514130-42514232)
chr5 (5-107)||(30731942-30732044)
chr5 (5-103)||(12825613-12825711)
chr5 (5-107)||(31641921-31642023)
chr5 (5-95)||(27116801-27116891)
chr5 (5-105)||(23238795-23238895)
chr5 (5-107)||(28535303-28535405)
chr5 (5-107)||(35983419-35983521)
chr5 (5-107)||(27795893-27795996)
chr5 (5-107)||(10777194-10777296)
chr5 (5-107)||(25857052-25857154)
chr5 (5-114)||(42928534-42928643)
chr5 (7-107)||(8299812-8299912)
chr5 (5-107)||(18089392-18089493)
[»] scaffold0472 (1 HSPs)
scaffold0472 (5-105)||(3664-3764)
[»] chr6 (11 HSPs)
chr6 (5-78)||(2554045-2554118)
chr6 (5-107)||(17573284-17573386)
chr6 (5-107)||(17605962-17606064)
chr6 (5-107)||(10576878-10576980)
chr6 (5-107)||(20882661-20882763)
chr6 (23-114)||(33185838-33185929)
chr6 (5-107)||(14372619-14372721)
chr6 (5-107)||(21629735-21629837)
chr6 (8-114)||(24767060-24767166)
chr6 (5-107)||(13938129-13938231)
chr6 (46-107)||(15958482-15958543)
[»] chr2 (4 HSPs)
chr2 (5-114)||(28253123-28253232)
chr2 (5-107)||(12645946-12646048)
chr2 (5-107)||(14440156-14440256)
chr2 (46-107)||(40177078-40177139)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 2364789 - 2364680
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364789 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 2364690  T
Q  105 gtgatgatgt 114  Q
    ||| ||||||    
T  2364689 gtggtgatgt 2364680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 10323199 - 10323301
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10323199 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 10323298  T
Q  105 gtg 107  Q
    |||    
T  10323299 gtg 10323301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 34332443 - 34332545
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||  | ||||||||||||||| ||||||    
T  34332443 agagatgggataggtgagggtggagagggatggtttgggacgtgtgttaggaggagggtgggagatggtgcagactcagatttttggcgtgatcgttggt 34332542  T
Q  105 gtg 107  Q
    |||    
T  34332543 gtg 34332545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 19919857 - 19919959
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||||||||| || ||||| ||||||  | |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  19919857 agagatgggataggtgagggaggtgagggttggtttcagacttgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgctggt 19919956  T
Q  105 gtg 107  Q
    |||    
T  19919957 gtg 19919959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17097505 - 17097607
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||  | ||||| || || || ||||||||||||||||||||||||||||    
T  17097505 agagatgggataggcgagggtggggaggggtggtttgtgtcgtgtgttaggagacgggtgggggacggagctgatactgatttttggcgtgattgttggt 17097604  T
Q  105 gtg 107  Q
    |||    
T  17097605 gtg 17097607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 48569667 - 48569769
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| ||||||| |  ||||||||||||||| ||||| ||||| || ||||| ||||||||||  ||||||||||    
T  48569667 agagatgggataggtgagggtggggagggttggtttgtggattgtgttaggaggagggtgggggatggagctgataccgatttttggcaagattgttggt 48569766  T
Q  105 gtg 107  Q
    |||    
T  48569767 gtg 48569769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 15313094 - 15312991
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggag-gagagtgggagatggggcagatactgatttttggcgtgattgttgg 103  Q
    ||||||| |||||| |||||||| ||||||||||||| ||| |||||||||||  || ||||| ||||| || ||||||||||||||| ||||| |||||    
T  15313094 agagatgagataggcgagggtggggagggatggtttgcgtcgtgtgttaggagaaagggtgggggatggagccgatactgatttttggtgtgatagttgg 15312995  T
Q  104 tgtg 107  Q
    ||||    
T  15312994 tgtg 15312991  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 16179459 - 16179360
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||| ||||||||| ||| |||||||| ||||| ||||| |||||  |  |||||||||||||||| ||| ||||||    
T  16179459 agagatgggataggcgagggtggggagagatggtttgtgtcgtgtgttagtaggagggtgggggatggatccaatactgatttttggcgcgatagttggt 16179360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 12341883 - 12341985
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| ||||||     |||||||| |||||| ||||| ||||| || |||||  |||||||||| ||||||||||    
T  12341883 agagatgggataggtgagggtggggagggctggtttacaggttgtgttaagaggagggtgggggatggagctgataccaatttttggcgagattgttggt 12341982  T
Q  105 gtg 107  Q
    |||    
T  12341983 gtg 12341985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 20531720 - 20531787
Alignment:
Q  47 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtgatgatgt 114  Q
    ||||| |||||||| ||||| || ||||| || ||| ||||||||||||| |||||||||| ||||||    
T  20531720 tgtgtcaggaggagggtgggggacggggctgaaacttatttttggcgtgactgttggtgtggtgatgt 20531787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 105471 - 105573
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105471 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 105570  T
Q  105 gtg 107  Q
    |||    
T  105571 gtg 105573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 4937756 - 4937858
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4937756 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 4937855  T
Q  105 gtg 107  Q
    |||    
T  4937856 gtg 4937858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 11276876 - 11276976
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||| ||||||    
T  11276876 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatggtgcagataccgatttttggtgtgatcgttggt 11276975  T
Q  105 g 105  Q
    |    
T  11276976 g 11276976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 17721147 - 17721045
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || ||||||||| | ||||||||||    
T  17721147 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagagacagatttttggtgggattgttggt 17721048  T
Q  105 gtg 107  Q
    |||    
T  17721047 gtg 17721045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 29968486 - 29968386
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| || ||||| |||||||||||  |||||||||    
T  29968486 agagatgggataggtgagggtggagagggatgatttgggtcttgtgttaggaggaaggtgggagatggtgcggataccgatttttggcggaattgttggt 29968387  T
Q  105 g 105  Q
    |    
T  29968386 g 29968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 47877495 - 47877395
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||||| ||| |||||||| || ||| | || ||||||||||||||| ||||||    
T  47877495 agagatgggataggcgagggtggagatggatggtttgggacgtgtgttaggatgagggtgggagacggtgcataaacagatttttggcgtgatcgttggt 47877396  T
Q  105 g 105  Q
    |    
T  47877395 g 47877395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 235066 - 235166
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||||||||| || |||||| | |||||||||||||| ||||||||  |  || | || ||||||||||||||| ||||||    
T  235066 agagatgggataggcgagggtggagagggctgatttgggacgtgtgttaggaggagggtgggagacagtacaaaaacagatttttggcgtgatcgttggt 235165  T
Q  105 g 105  Q
    |    
T  235166 g 235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 31423114 - 31423012
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||||||||||| |  ||||||||||||||| ||||  |||||    || || ||||||||||| ||||||||||    
T  31423114 agagatgggataggcgagggtggggagggatggtttgcgggttgtgttaggaggagggtggaggatggaattgaaacggatttttggcgagattgttggt 31423015  T
Q  105 gtg 107  Q
    |||    
T  31423014 gtg 31423012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 37255270 - 37255170
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||| |||||| |||||||  ||| | ||||||| |  ||||||||||||||| ||||| ||||| || || || ||||||||||| ||||||||||    
T  37255270 agagatgagataggcgagggtgaggagagttggtttgcgggttgtgttaggaggagggtgggggatggagccgaaaccgatttttggcgagattgttggt 37255171  T
Q  105 g 105  Q
    |    
T  37255170 g 37255170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 23642219 - 23642321
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23642219 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 23642318  T
Q  105 gtg 107  Q
    |||    
T  23642319 gtg 23642321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 47419316 - 47419214
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47419316 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 47419217  T
Q  105 gtg 107  Q
    |||    
T  47419216 gtg 47419214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 1828168 - 1828268
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| ||||||    
T  1828168 agagatgggataggtgagggtggtgagggatggtttgggtcttgtgttaggaggagggtgggagatggtgcagacactgacttttggcgtgatcgttggt 1828267  T
Q  105 g 105  Q
    |    
T  1828268 g 1828268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 15740730 - 15740633
Alignment:
Q  7 agatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  15740730 agatgagataggtgagggtggagagggatggtttgggtcttgtgt-aggaggagggtgggagatggtgcagatactgatttttggcgtgatcgttggtg 15740633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 19755779 - 19755679
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||    
T  19755779 agagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggt 19755680  T
Q  105 g 105  Q
    |    
T  19755679 g 19755679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 19784027 - 19784127
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||    
T  19784027 agagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggt 19784126  T
Q  105 g 105  Q
    |    
T  19784127 g 19784127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 23647877 - 23647939
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtggga 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23647877 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtggga 23647939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 5789720 - 5789822
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||||| ||| | ||||| ||  ||| |||||||||||||||||||||||    
T  5789720 agagatgggataggcgagggtggggagggatggtttgcgtcgtgtgttagtaggagggtgcgggatggagccaatattgatttttggcgtgattgttggt 5789819  T
Q  105 gtg 107  Q
    |||    
T  5789820 gtg 5789822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 54482787 - 54482889
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||||||| | ||||||| |  ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||    
T  54482787 agagatgggataggcgagggtggagagagttggtttgtggattgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 54482886  T
Q  105 gtg 107  Q
    |||    
T  54482887 gtg 54482889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 2821662 - 2821764
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||    
T  2821662 agagatgggataggcgagggtggggagggttggtttgcagattgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 2821761  T
Q  105 gtg 107  Q
    |||    
T  2821762 gtg 2821764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 48312606 - 48312504
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||| |||||| |||||||||||||| ||||||| |  ||||||||||||||| ||||| ||||| || ||||  ||||||||||| ||||||||||    
T  48312606 agagatgagataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggt 48312507  T
Q  105 gtg 107  Q
    |||    
T  48312506 gtg 48312504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 55725333 - 55725436
Alignment:
Q  4 cagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttgg 103  Q
    ||||||||||||||| |||||||| ||||| ||||||| |  ||||||||||| ||| ||||||||||| ||    || ||||||||||| |||||||||    
T  55725333 cagagatgggataggcgagggtggggagggttggtttgcggattgtgttaggatgagggtgggagatggagccacaacagatttttggcgagattgttgg 55725432  T
Q  104 tgtg 107  Q
    ||||    
T  55725433 tgtg 55725436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 11586826 - 11586937
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| | ||| |||||   |  ||||||||||||||| |||   |||||  | || |||||||| |||||||| |||||||    
T  11586826 agagatgggataggtgagggtggggtgggctggttctcggattgtgttaggaggagggtgaaggatggatccgaaactgatttctggcgtgactgttggt 11586925  T
Q  105 gtgatgatgtcc 116  Q
    ||| ||||||||    
T  11586926 gtggtgatgtcc 11586937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 19735363 - 19735465
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||| | ||||| ||||||||  |||||| |||  ||||||||||    |||||||| || || || ||||| ||||||| |||||||||||    
T  19735363 agagatgggataagagagggcggagagggtaggtttgtgtcgggtgttaggagacaggtgggagacggtgctgagactgacttttggcatgattgttggt 19735462  T
Q  105 gtg 107  Q
    |||    
T  19735463 gtg 19735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 6051115 - 6051013
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6051115 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 6051016  T
Q  105 gtg 107  Q
    |||    
T  6051015 gtg 6051013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 35541561 - 35541459
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541561 agagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 35541462  T
Q  105 gtg 107  Q
    |||    
T  35541461 gtg 35541459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 11908733 - 11908835
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  11908733 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttgacgtgattgttggt 11908832  T
Q  105 gtg 107  Q
    |||    
T  11908833 gtg 11908835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 43388877 - 43388775
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||| ||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||| ||||||||||||| ||||||||||    
T  43388877 agagatgggataggtgatggtggggagggctggtttacaagttgtgttaggaggagggtgggggatggagctgatgctgatttttggcgagattgttggt 43388778  T
Q  105 gtg 107  Q
    |||    
T  43388777 gtg 43388775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 47622705 - 47622814
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||   |||| ||| ||||| ||||||  |  ||||||||||||||| ||||| |||||  | ||||||||||||||||| ||||||||||    
T  47622705 agagatgggataaacgaggatggggagggttggttttcggattgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgttggt 47622804  T
Q  105 gtgatgatgt 114  Q
    ||| ||||||    
T  47622805 gtggtgatgt 47622814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 4e-49; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 8300315 - 8300213
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300315 agagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 8300216  T
Q  105 gtg 107  Q
    |||    
T  8300215 gtg 8300213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 7924898 - 7924787
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  7924898 agagatgggatacgtgagggtggagagggatggtttgggtcttgtgttacgaggagagtgggacatggggcacatactgattttgggcgtgattgttggt 7924799  T
Q  105 gtgatgatgtcc 116  Q
    |||  |||||||    
T  7924798 gtggagatgtcc 7924787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 9923113 - 9923011
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||    
T  9923113 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagagacagatttttggcgggattgttggt 9923014  T
Q  105 gtg 107  Q
    |||    
T  9923013 gtg 9923011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 32267074 - 32266974
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||  |||||||||    
T  32267074 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggaaggtgggagatggtgcggatactgatttttggcggtattgttggt 32266975  T
Q  105 g 105  Q
    |    
T  32266974 g 32266974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 41664996 - 41665097
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactga-tttttggcgtgattgttgg 103  Q
    |||||||||||| |||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  41664996 agagatgggatatgtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgattttttggcgtgatcgttgg 41665095  T
Q  104 tg 105  Q
    ||    
T  41665096 tg 41665097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 13879115 - 13879217
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||||||||| ||||||| |  ||||||||||||||| ||||| ||||  || ||||||||||||||||| ||||||||||    
T  13879115 agagatgggataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatgaagctgatactgatttttggcgagattgttggt 13879214  T
Q  105 gtg 107  Q
    |||    
T  13879215 gtg 13879217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 17699992 - 17699890
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||    
T  17699992 agagatgggataggtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggt 17699893  T
Q  105 gtg 107  Q
    |||    
T  17699892 gtg 17699890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 25090899 - 25090797
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| ||||||||| |||| ||||||  |  ||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||    
T  25090899 agagatgggataggcgagggtggaaagggttggtttacggattgtgttaggaggagggtgggggatggagcagatactgatttttggcgagattgttggt 25090800  T
Q  105 gtg 107  Q
    |||    
T  25090799 gtg 25090797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 20824811 - 20824709
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||||    
T  20824811 agagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgtgattgttggt 20824712  T
Q  105 gtg 107  Q
    |||    
T  20824711 gtg 20824709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 172667 - 172716
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttag 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172667 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttag 172716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 43270964 - 43270862
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||| |||||||    ||||||||||||||| || || ||||| || ||||| ||||||||||  || |||||||    
T  43270964 agagatgggataggcgagggtggggagggctggtttgcaggttgtgttaggaggagggtaggggatggagccgataccgatttttggccagactgttggt 43270865  T
Q  105 gtg 107  Q
    |||    
T  43270864 gtg 43270862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 42177180 - 42177279
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||    ||||||| |  ||||||||||||||| ||||| |||||||| || |  ||||||||||| ||||||||||    
T  42177180 agagatgggataggcgagggtggggat---tggtttgcgggttgtgttaggaggagggtgggggatggggccgaaatcgatttttggcgagattgttggt 42177276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 13396849 - 13396800
Alignment:
Q  56 aggagagtgggagatggggcagatactgatttttggcgtgattgttggtg 105  Q
    ||||| ||||||||||| ||||| | |||||||||||||||| |||||||    
T  13396849 aggagggtgggagatggtgcagacattgatttttggcgtgatcgttggtg 13396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 4e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 42514232 - 42514130
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42514232 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttctggcgtgattgttggt 42514133  T
Q  105 gtg 107  Q
    |||    
T  42514132 gtg 42514130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 30731942 - 30732044
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  30731942 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttggt 30732041  T
Q  105 gtg 107  Q
    |||    
T  30732042 gtg 30732044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 12825711 - 12825613
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttgg 103  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12825711 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttgg 12825613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 31642023 - 31641921
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||    
T  31642023 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagatacagatttttggcgggattgttggt 31641924  T
Q  105 gtg 107  Q
    |||    
T  31641923 gtg 31641921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 27116801 - 27116891
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtg 95  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  27116801 agagatgggataggtgagggtggagggggatggtttgggtcttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtg 27116891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 23238895 - 23238795
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||  | ||||| ||||||||||||||| ||||||    
T  23238895 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatggtacggataccgatttttggcgtgatcgttggt 23238796  T
Q  105 g 105  Q
    |    
T  23238795 g 23238795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 28535303 - 28535405
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || | ||| || ||||||||||| ||||||||||    
T  28535303 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgtagaaacagatttttggcgggattgttggt 28535402  T
Q  105 gtg 107  Q
    |||    
T  28535403 gtg 28535405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 35983419 - 35983521
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||| |||    
T  35983419 agagatgggataggtgacggtggagagggttggtttggatcttgtgttaggaggagggtgggagacggtgcagaaacggatttttggcgtgattgtaggt 35983518  T
Q  105 gtg 107  Q
    |||    
T  35983519 gtg 35983521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 27795996 - 27795893
Alignment:
Q  5 agagatgggatag-gtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttgg 103  Q
    ||||||||||||| | |||||||||||||| ||||||| |  ||||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||    
T  27795996 agagatgggatagcgcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatggagctgatactgatttttggcgagattgttgg 27795897  T
Q  104 tgtg 107  Q
    ||||    
T  27795896 tgtg 27795893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 10777296 - 10777194
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||| |||||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||    
T  10777296 agagatgggatatgtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggt 10777197  T
Q  105 gtg 107  Q
    |||    
T  10777196 gtg 10777194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 25857052 - 25857154
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||||||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||    
T  25857052 agagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggt 25857151  T
Q  105 gtg 107  Q
    |||    
T  25857152 gtg 25857154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 42928643 - 42928534
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||||| || || || || || ||||||| ||||||||||||||    
T  42928643 agagatgggataggtgagggtggagagggctggtttggggcgtgttttaggaggagggtgggtgacggtgctgaaacagatttttagcgtgattgttggt 42928544  T
Q  105 gtgatgatgt 114  Q
    | | ||||||    
T  42928543 gcggtgatgt 42928534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 8299812 - 8299912
Alignment:
Q  7 agatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgt 106  Q
    ||||||||||||||||||||| ||||||||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||    
T  8299812 agatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggtgt 8299911  T
Q  107 g 107  Q
    |    
T  8299912 g 8299912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 18089392 - 18089493
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||| |||| |||||||| ||||| ||||||| ||| ||||||||| |    ||||| ||||| ||  |||||||||||||||||||||||| ||    
T  18089392 agagatgggttaggcgagggtgg-gaggggtggtttgtgtcgtgtgttaggcgtcaggtgggtgatggagcttatactgatttttggcgtgattgttagt 18089490  T
Q  105 gtg 107  Q
    |||    
T  18089491 gtg 18089493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 3764 - 3664
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  3764 agagatgggataggtgagggtggagaggggtggtttgggtcctgcgttaggaggagggtgggagatggtgcggataccgatttttggcgtgattgttggt 3665  T
Q  105 g 105  Q
    |    
T  3664 g 3664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 2554118 - 2554045
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcaga 78  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  2554118 agagatgggataggtgagggtggagagggatggtttgggacttgtgttaggaggagggtgggagatggtgcaga 2554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17573284 - 17573386
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||    
T  17573284 agagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggt 17573383  T
Q  105 gtg 107  Q
    |||    
T  17573384 gtg 17573386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17605962 - 17606064
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||    
T  17605962 agagatgggataggtgagggtggggagggctggtttacaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 17606061  T
Q  105 gtg 107  Q
    |||    
T  17606062 gtg 17606064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 10576878 - 10576980
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||||| | ||||||||||    
T  10576878 agagatgggataggtgagggtggggagggctggtttataggttgtgttaggaggagggtgggggatggagctgataccgatttttggtgagattgttggt 10576977  T
Q  105 gtg 107  Q
    |||    
T  10576978 gtg 10576980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 20882661 - 20882763
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||| |||||||  | ||||||||||||||| ||||| ||||| || || ||  |||||||||| ||||||||||    
T  20882661 agagatgggataggcgagggtggggagggttggtttgcatgttgtgttaggaggagggtgggggatggagccgaaaccaatttttggcgagattgttggt 20882760  T
Q  105 gtg 107  Q
    |||    
T  20882761 gtg 20882763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 33185929 - 33185838
Alignment:
Q  23 ggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtgatgatgt 114  Q
    ||||| ||||| |||||||  |||| |||  ||||||| ||||| |||||||| || |||||||||||||||||||||||||||| ||||||    
T  33185929 ggtggtgaggggtggtttgtatcttatgtctggaggagggtgggggatggggctgaaactgatttttggcgtgattgttggtgtggtgatgt 33185838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 14372619 - 14372721
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    ||||| ||||||| ||||||||| ||||| ||||||  |  |||||| |||||||| ||||| |||||  | ||||||||||||||||| ||||||||||    
T  14372619 agagacgggatagatgagggtggggagggttggttttcgggttgtgtcaggaggagggtgggggatggttccgatactgatttttggcgggattgttggt 14372718  T
Q  105 gtg 107  Q
    |||    
T  14372719 gtg 14372721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 21629735 - 21629837
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||| |||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||  ||||||||||| ||||||||||    
T  21629735 agagatgggataagtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggt 21629834  T
Q  105 gtg 107  Q
    |||    
T  21629835 gtg 21629837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 24767060 - 24767166
Alignment:
Q  8 gatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtg 107  Q
    ||||||||| |||||||||||||||| ||||||||| | |||||||||||||| ||||| || || ||  | |  ||||||||||||||| ||||||| |    
T  24767060 gatgggatatgtgagggtggagagggctggtttggggcgtgtgttaggaggagggtgggtgacggtgctaaaatagatttttggcgtgatcgttggtgcg 24767159  T
Q  108 atgatgt 114  Q
     ||||||    
T  24767160 gtgatgt 24767166  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 13938231 - 13938129
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagag-tgggagatggggcagatactgatttttggcgtgattgttgg 103  Q
    |||||||||||||| ||||| |||||||| |||||||  ||  |||||||||| |||| |||||||||| || || ||||| ||||| ||||||||||||    
T  13938231 agagatgggataggagagggaggagagggttggtttgcatcaggtgttaggag-agaggtgggagatggtgctgagactgacttttgtcgtgattgttgg 13938133  T
Q  104 tgtg 107  Q
    ||||    
T  13938132 tgtg 13938129  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 15958482 - 15958543
Alignment:
Q  46 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtg 107  Q
    ||||||||||||||| ||||| |||||  | || ||||||||||||||||||||||||||||    
T  15958482 ttgtgttaggaggagggtgggggatggatccgaaactgatttttggcgtgattgttggtgtg 15958543  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 28253232 - 28253123
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||  |||||||| ||||| ||||||  |  ||||||||||||||| ||||| |||||  | ||||||||||||||||| |||||| |||    
T  28253232 agagatgggatagacgagggtggggagggttggttttcggtttgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgtcggt 28253133  T
Q  105 gtgatgatgt 114  Q
    ||| ||||||    
T  28253132 gtggtgatgt 28253123  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 12646048 - 12645946
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||  ||||||| |  ||||||||||||||| ||||||||||| ||    || ||||||||||| ||||||||||    
T  12646048 agagatgggataggcgagggtggggaggattggtttgcggattgtgttaggaggagggtgggagatggagccacaacagatttttggcgagattgttggt 12645949  T
Q  105 gtg 107  Q
    |||    
T  12645948 gtg 12645946  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 14440256 - 14440156
Alignment:
Q  5 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 104  Q
    |||||||||||||| |||||||| ||||| |||||||    ||||||  ||||||| ||| | ||||| || ||||| ||| ||||||| ||||||||||    
T  14440256 agagatgggataggcgagggtggggagggctggtttgcaggttgtgt--ggaggagggtgagggatggagccgataccgatatttggcgagattgttggt 14440159  T
Q  105 gtg 107  Q
    |||    
T  14440158 gtg 14440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 40177139 - 40177078
Alignment:
Q  46 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtg 107  Q
    ||||||||||||||| ||||| ||||| |  ||||| ||||||||| | |||||||||||||    
T  40177139 ttgtgttaggaggagggtgggggatggagttgataccgatttttggtgagattgttggtgtg 40177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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