View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0801_low_5 (Length: 325)
Name: NF0801_low_5
Description: NF0801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0801_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 28081794 - 28082092
Alignment:
| Q |
1 |
ttattggctatgtaatatggagttgtagaattagtgaacatcttttcttcatgtctgctggagaaagaaatgtagtagctaaagtgaactatttttgttt |
100 |
Q |
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| T |
28081794 |
ttattggctatgtaatatggagttgtagaattagggaacatcttttcttcatgtctgctggagaaagaaatgtagtagctaaagtgaactatttttgttt |
28081893 |
T |
|
| Q |
101 |
tatcattatt--ctgtgttgagtgagtgnnnnnnnnnnnnnnngtttctcaattaccataaatgtgaattcaacttgataagttttatggattattgata |
198 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28081894 |
tatcattattatctgtgttgagtgagtgtatatatat------gtttctcaattaccataaatgtgaattcaacttgataagttttatggattattgata |
28081987 |
T |
|
| Q |
199 |
tgattatcaactattaaggttatgagatgagtccttcatttctttccaaatcagtttttgtgataccatttgtgtgattcgtatgtgatattggtttgtt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
28081988 |
tgattatcaactattaaggttatgagatgagtccttcatttctttccaaatcag-ttttgtgataccatttgtgtgattc--atatgatattggtttgtt |
28082084 |
T |
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