View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0801_low_7 (Length: 292)
Name: NF0801_low_7
Description: NF0801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0801_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 6290069 - 6290239
Alignment:
| Q |
53 |
atgaagtaaaaattgtgttattctattaagtttcttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaacttaacag |
152 |
Q |
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| T |
6290069 |
atgaagtaaaaattgtgttattcaattcagtttgttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaacttaacag |
6290168 |
T |
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| Q |
153 |
ctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttct |
223 |
Q |
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| T |
6290169 |
ctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgctcctcaagtaatcttccttct |
6290239 |
T |
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Back To:
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 4734115 - 4734044
Alignment:
| Q |
145 |
cttaacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatct |
216 |
Q |
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| T |
4734115 |
cttaacagttgcacaagcttatgttgcaagtgagttagagttgtaagtggtagcttgttcctcatgtaatct |
4734044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 14932079 - 14932119
Alignment:
| Q |
147 |
taacagctgtacaagcttatgtggcaagttagttagagtta |
187 |
Q |
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| T |
14932079 |
taacagttgtacatgcttatgtggcaagttagttcgagtta |
14932119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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