View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0802-Insertion-1 (Length: 1061)
Name: NF0802-Insertion-1
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-167; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 4304827 - 4304505
Alignment:
| Q |
7 |
agggtgcctcatgaaacacccgcaaatt-ggcccaaaatatcccacatccgaggcattaagtatgaccgcaaatcaggtaacttttctgccattcctcag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4304827 |
agggtgcctcatgaaacacccgcaaatttggcccaaaatatcccacatccgaggcattaagtatgaccgcaaatcaggtaacttttctgccattcctcag |
4304728 |
T |
|
| Q |
106 |
ctaaattcctgatttaaattattttatgcaccaagtcacctctgctcttcttgcttatacttcttatttagattaatttttctgtagtgaagaaagattt |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4304727 |
ctaaattcctgaattaaattattttatgcaccaagtcacctctgctcttcttgcttatacttcttatttagattaatttttctgtagtgaagaaagattt |
4304628 |
T |
|
| Q |
206 |
ctggagaagattctggcatcaaaagttcaaacttcaactgaaaagactccaaatattaattcattttatatggtggatatcttcaattgcaaacctcgct |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4304627 |
ctggagaagaaactggcatcaaaagttcaaacttcaactgaaaagactccaaatattaattcattttatatggtggatatcttcaattgcaaacctcggt |
4304528 |
T |
|
| Q |
306 |
gctgaaaaaattattatggagga |
328 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4304527 |
gctgaaaaaattattatggagga |
4304505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 738 - 1061
Target Start/End: Complemental strand, 4303997 - 4303672
Alignment:
| Q |
738 |
tctggggtgaaggagagagccacaatccatactaccagtctaactgcagaatccttcccacaacaattattggaaaatctttggcccaaaatt-ccctca |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
4303997 |
tctggggtgaaggagagagccacaatccatactaccagtctaactgcagaatccttcccacaacaattattgaaaaatctttggcccaaaatttccctca |
4303898 |
T |
|
| Q |
837 |
tccaaatcatttatgctaacaacgcgttaatttctaaagcttgaacttggattatcatatcaacaggaaattgttccgctgttcctcatgtaaatgccac |
936 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4303897 |
tccaaatgatttatgctaacaacgcgttaatttctaaagcttgaacttggattatcatatcaacaggaaattgttccgctgttcctcatgtaaatgccac |
4303798 |
T |
|
| Q |
937 |
ttgcccaatttcattcatttcctataa-ttttactgcttaattcaatcattacatgttttttccgctagctaattccaatttcc-aagcacatttttata |
1034 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4303797 |
ttgcccaatttcattcatttcctataatttttactgcttaattcaatcattacatgtttttt-cgctagctaattccaatttccgaagcacatttttata |
4303699 |
T |
|
| Q |
1035 |
gtcttgcacacatccgacacttgctgg |
1061 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4303698 |
gtcttgcacacatccgacacttgctgg |
4303672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 470 - 738
Target Start/End: Complemental strand, 4304508 - 4304240
Alignment:
| Q |
470 |
aggatgaagatatcaggtgcttcatacaagcctagtttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatcc |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4304508 |
aggatgaagatatcaggtgcttcatacaagcctagtttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatcc |
4304409 |
T |
|
| Q |
570 |
attgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctgaacaccccg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4304408 |
attgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctgaacaccccg |
4304309 |
T |
|
| Q |
670 |
tgaaagaaagttcgtaatggatggctctagaggtatgctcttacgtcttcatgtcactgaatgtctcgt |
738 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4304308 |
tgaaagaaagttcgtaatggatggctctagaggtatgctcttacgtcttcatgtcactgaatgtctcgt |
4304240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 558 - 713
Target Start/End: Original strand, 4249925 - 4250080
Alignment:
| Q |
558 |
ttgttgtgatccattgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtag |
657 |
Q |
| |
|
||||||| | |||||||||||||| |||||| |||||||||| |||||| |||||||| |||||||||||||||| | |||||||| | ||| |||| |
|
|
| T |
4249925 |
ttgttgttagccattgtgatactgataggatgagtattatccttatattaatcttgagttacttaggatttccatttttagcagctgctggaatatgtag |
4250024 |
T |
|
| Q |
658 |
ctgaacaccccgtgaaagaaagttcgtaatggatggctctagaggtatgctcttac |
713 |
Q |
| |
|
|||||||| || |||| |||| | | | |||||||| |||||||||||||||| |
|
|
| T |
4250025 |
ctgaacactccatgaaggaaattccaaaccagatggctccagaggtatgctcttac |
4250080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 4249692 - 4249807
Alignment:
| Q |
180 |
aatttttctgtagtgaagaaagatttctggagaagattctggcatcaaaagttcaaacttcaactgaaaagactccaaatattaattcattttatatggt |
279 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||||| | ||| |||||| ||||||||||||| | ||||| |
|
|
| T |
4249692 |
aatttttttgtagtgataaaagatttctggatgagaaatccgcatcaaaagttcaaacttcaattaaaaggactcctgttattaattcatttcagatggt |
4249791 |
T |
|
| Q |
280 |
ggatatcttcaattgc |
295 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
4249792 |
ggacatcttcaattgc |
4249807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 4311866 - 4311808
Alignment:
| Q |
9 |
ggtgcctcatgaaacacccgcaaatt-ggcccaaaatatcccacatccgaggcattaag |
66 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
4311866 |
ggtgccgcatgaaacacccacaaatttggcccaaaatatcccatatccgaggcattaag |
4311808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 375 - 738
Target Start/End: Original strand, 41936195 - 41936549
Alignment:
| Q |
375 |
ttttacaataaaatacgatttcaattttcataatttttagtgcttaaatcagtcattacatgttctttagctttgacgtaggctcttagacttgtaggat |
474 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
41936195 |
ttttacgataaaatatgatttcaatttctataatttttactgcttaactcagtcattacatgttctttagctttgttgtaggctcttagacttgtaatat |
41936294 |
T |
|
| Q |
475 |
gaagatatcaggtgcttcatacaagcctagtttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatccattgt |
574 |
Q |
| |
|
||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||| ||||||| |
|
|
| T |
41936295 |
gaagaaatcaggtgcttcgcacaagactaatttggatattccacttccctttttggtaacatatcatactcattagtcattagttgctgtgggccattgt |
41936394 |
T |
|
| Q |
575 |
gatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctg-aacaccccgtgaa |
673 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |||| ||||||| ||||| || |||| |
|
|
| T |
41936395 |
----------ggattagtattatccatatattcaatttgggttaattaggatttcaattttaaacagctgctgagatatgtagctgtaacactccatgaa |
41936484 |
T |
|
| Q |
674 |
agaaagttcgtaatggatggctctagaggtatgctcttacgtcttcatgtcactgaatgtctcgt |
738 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||| ||||| |||| || |||||||||| |
|
|
| T |
41936485 |
agaaagtccataatgcatggctctagaggtatgctcttatgtctttctgtcccttaatgtctcgt |
41936549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 738 - 796
Target Start/End: Original strand, 41936750 - 41936808
Alignment:
| Q |
738 |
tctggggtgaaggagagagccacaatccatactaccagtctaactgcagaatccttccc |
796 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
41936750 |
tctggggtgaaggagagagccacaatccagacaaccagtctaactgcagaatccttccc |
41936808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 41936072 - 41936126
Alignment:
| Q |
9 |
ggtgcctcatgaaacacccgcaaa-ttggcccaaaatatcccacatccgaggcat |
62 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
41936072 |
ggtgccgcatgaaacacccgcaaatttggcccaaaatttccctcatcagaggcat |
41936126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 742 - 800
Target Start/End: Complemental strand, 23111648 - 23111590
Alignment:
| Q |
742 |
gggtgaaggagagagccacaatccatactaccagtctaactgcagaatccttcccacaa |
800 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| ||||||||||||||||| |||||||| |
|
|
| T |
23111648 |
gggtgaaggagagagccacgatccaaacaaccggtctaactgcagaatccgtcccacaa |
23111590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 690 - 738
Target Start/End: Complemental strand, 23111943 - 23111895
Alignment:
| Q |
690 |
atggctctagaggtatgctcttacgtcttcatgtcactgaatgtctcgt |
738 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
23111943 |
atggctctaaaggtatgctcttacgtattcatgtcacttaatttctcgt |
23111895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 928 times since January 2019
Visitors: 5820