View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802-Insertion-10 (Length: 482)

Name: NF0802-Insertion-10
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802-Insertion-10
NF0802-Insertion-10
[»] chr7 (3 HSPs)
chr7 (8-482)||(3739703-3740174)
chr7 (212-482)||(3745420-3745690)
chr7 (212-481)||(3732353-3732625)
[»] chr8 (1 HSPs)
chr8 (270-481)||(20522017-20522228)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 3740174 - 3739703
Alignment:
Q  8 aaattagaagaaaaacttgttcaacataaagtatcaaatgaataagattgtaccataaaccaatttttgaacta--gaaagcaaagactttcattaatca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3740174 aaattagaagaaaaacttgttcaacataaagtatcaaatgaataagattgtaccataaaccaatttttgaactatagaaagcaaagactttcattaatca 3740075  T
Q  106 aaatacnnnnnnnnnnaagaattaatcataacacatgaaattacatgatacattgatacgtgtaataattttatttttaactcaatacacgtaataaata 205  Q
    ||| ||          ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        
T  3740074 aaacacttttttttt-aagaattaaccataacacatgaaattacatgatacattgatacgtgtaataattttatttttaactcaatacacataata---- 3739980  T
Q  206 gtctagtttgtgactatatatatttctcaactaaattatacgtatctaaaaatttccattaccctcataggtctgcccaaattgccaattcgaaggagca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3739979 gtctagtttgtgactatatatatttctcaactaaattatacgtatctaaaaatttccattaccctcataggtctgcccaaattgccaattcgaaggagca 3739880  T
Q  306 actgaatctaactctaaagtttttccaccacttgtagtaacttggaatgataaggcttgtcctaccaaattcattccggtattccaattttgcccccaat 405  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3739879 actgaatctaactctaaagtttttccgccacttgtagtaacttggaatgataaggcttgtcctaccaaattcattccagtattccaattttgcccccaat 3739780  T
Q  406 tgtgtgacatgggaatccattcggtattagaccctttgatactaacactagaaacatctcccgcattggcaacattg 482  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3739779 tgtgtgacatgggaatccatccggtattagaccctttgatactaacactagaaacatctcccgcattggcaacattg 3739703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 212 - 482
Target Start/End: Complemental strand, 3745690 - 3745420
Alignment:
Q  212 tttgtgactatatatatttctcaactaaattatacgtatctaaaaatttccattaccctcataggtctgcccaaattgccaattcgaaggagcaactgaa 311  Q
    |||||||||| |  ||||||||||||||| | ||| ||||||||||||||| ||  ||| ||| ||||| ||||||||||| || |||||| |||| |||    
T  3745690 tttgtgactagagttatttctcaactaaaatctacttatctaaaaatttcccttggcctgataagtctgtccaaattgccagttggaaggaacaacggaa 3745591  T
Q  312 tctaactctaaagtttttccaccacttgtagtaacttggaatgataaggcttgtcctaccaaattcattccggtattccaattttgcccccaattgtgtg 411  Q
    || |||  ||||||||||||| |||||||| ||||||| ||||| || ||||||||||| |||||   ||| | || ||||||||| ||||||||  |||    
T  3745590 tcaaacgttaaagtttttccatcacttgtactaacttgaaatgacaaagcttgtcctacaaaattagatccaggatgccaattttgtccccaattacgtg 3745491  T
Q  412 acatgggaatccattcggtattagaccctttgatactaacactagaaacatctcccgcattggcaacattg 482  Q
    |||| | ||||||    || || |||||||| ||||| |||| ||||||||| || |||||||||||||||    
T  3745490 acatagaaatccaacttgtcttggaccctttaatactcacacgagaaacatcaccagcattggcaacattg 3745420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 481
Target Start/End: Complemental strand, 3732625 - 3732353
Alignment:
Q  212 tttgtgactatatatatttctcaactaaattatacgtatctaaaaatttccattaccctcataggtctgcccaaattgccaattcgaaggagcaactgaa 311  Q
    ||||||| || || ||||||||||| |||||||||  || |||||||||   |||||||| || ||||| ||||||||||||||||||||| ||||  ||    
T  3732625 tttgtgaatagatgtatttctcaacaaaattatacaaatttaaaaattttgcttaccctcgtacgtctgaccaaattgccaattcgaaggaacaacaaaa 3732526  T
Q  312 tctaactctaaagtttttccaccacttgtagtaacttggaatgataaggcttgtcctaccaaattcattccggtattccaattttgcccccaattgtgtg 411  Q
       ||  | ||  |||||||| ||||||| |||||  | ||||| |||  |||||||| ||| |||| ||  || | ||||||||| |||||||||||||    
T  3732525 ggaaaacccaacatttttccatcacttgttgtaacaagaaatgacaagctttgtcctaacaatttcactctagtgtcccaattttgtccccaattgtgtg 3732426  T
Q  412 acatgggaatccattcg---gtattagaccctttgatactaacactagaaacatctcccgcattggcaacatt 481  Q
    |||| | ||||||  ||   || || |||||| | | |||||||  ||||||||| || ||||||||||||||    
T  3732425 acatcgaaatccaaccggtcgtcttcgaccctctaacactaacatgagaaacatcaccagcattggcaacatt 3732353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 481
Target Start/End: Original strand, 20522017 - 20522228
Alignment:
Q  270 tcataggtctgcccaaattgccaattcgaaggagcaactgaatctaactctaaagtttttccaccacttgtagtaacttggaatgataaggcttgtccta 369  Q
    |||||||| || |||||||||||||| |||||||||||  |||  |||||||||| ||||||| | |||||||||||    ||||||||| |||| || |    
T  20522017 tcataggtttgtccaaattgccaattagaaggagcaacaaaattaaactctaaagcttttccatcgcttgtagtaaccaaaaatgataagtcttgaccaa 20522116  T
Q  370 ccaaattcattccggtattccaattttgcccccaattgtgtgacatgggaatccattcggtattagaccctttgatactaacactagaaacatctcccgc 469  Q
    ||||||||| ||| |||| ||||  ||| ||||||||||||| ||||| |||||| |  ||| ||||||||||||| || |||||  ||||||| || ||    
T  20522117 ccaaattcaatccagtatcccaaaattgtccccaattgtgtgccatggaaatccaatatgtactagaccctttgattctcacacttaaaacatcacctgc 20522216  T
Q  470 attggcaacatt 481  Q
    ||| ||||||||    
T  20522217 attagcaacatt 20522228  T

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