View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802-Insertion-15 (Length: 101)
Name: NF0802-Insertion-15
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802-Insertion-15 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 25591738 - 25591831
Alignment:
| Q |
8 |
ccatattgatgtgtgggatatctcttgtagtttctcatgctcactataatattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
25591738 |
ccatattgatgtgtgggatatctcttgtagtttctcatgctcactataatattgtcacttttattgatgaatacattcgttttacttgaatata |
25591831 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 17605280 - 17605209
Alignment:
| Q |
33 |
tgtagtttctcatgctcactataa---tattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
17605280 |
tgtagtttctcatgctcgctataaatattttgtcacatttattgatgattaaattcgttttacttggatata |
17605209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 9786706 - 9786641
Alignment:
| Q |
39 |
ttctcatgctcactataa---tattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
9786706 |
ttctcatgctcattataaatattttgtcacatttattgatgattacagtcgttttacttggatata |
9786641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 35936580 - 35936483
Alignment:
| Q |
9 |
catattgatgtgtggg--atatctcttgtagtttctcatgctcactataa---tattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
35936580 |
catagtgatgtgtggggaatgtctcctatagcttctcatgctcattataaatattttgtcacatttattgatgattacagtcgttttacttggatata |
35936483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 21692331 - 21692428
Alignment:
| Q |
9 |
catattgatgtgtggg--atatctcttgtagtttctcatgctcactataa---tattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
21692331 |
catagtgatgtgtggggaatgtctcctatagcttctcatgctcgctataaatattttgtcacatttattgatgattacagtcgttttacttggatata |
21692428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 26625735 - 26625638
Alignment:
| Q |
9 |
catattgatgtgtggg--atatctcttgtagtttctcatgctcactataa---tattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
26625735 |
catagtgatgtgtggggaatgtctcctatagcttctcatgctcattataaatattttgtcacatttattgatgattacagtcgttttacttggatata |
26625638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 49118417 - 49118482
Alignment:
| Q |
39 |
ttctcatgctcactataa---tattgtcacttttattgatgattactttcgttttacttgaatata |
101 |
Q |
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| T |
49118417 |
ttctcatgctcattataaatattttgtcacatttattgatgattacagtcgttttacttggatata |
49118482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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