View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802-Insertion-3 (Length: 1039)

Name: NF0802-Insertion-3
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802-Insertion-3
NF0802-Insertion-3
[»] chr5 (13 HSPs)
chr5 (6-1033)||(35435405-35436435)
chr5 (6-216)||(35422060-35422270)
chr5 (804-948)||(35754007-35754151)
chr5 (491-948)||(35422545-35422999)
chr5 (572-906)||(35375364-35375698)
chr5 (563-906)||(35365812-35366155)
chr5 (804-906)||(35405782-35405884)
chr5 (490-621)||(35753693-35753824)
chr5 (25-219)||(35753228-35753422)
chr5 (25-81)||(35404995-35405051)
chr5 (34-160)||(35365283-35365409)
chr5 (31-161)||(35374823-35374953)
chr5 (563-605)||(35405541-35405583)
[»] chr8 (2 HSPs)
chr8 (563-678)||(13564313-13564428)
chr8 (29-206)||(13563780-13563957)
[»] chr2 (10 HSPs)
chr2 (804-919)||(30662212-30662327)
chr2 (804-919)||(30634483-30634598)
chr2 (804-906)||(30670892-30670994)
chr2 (490-614)||(30661898-30662022)
chr2 (490-614)||(30634169-30634293)
chr2 (490-614)||(30670578-30670702)
chr2 (34-81)||(30633713-30633760)
chr2 (563-614)||(30659873-30659924)
chr2 (34-81)||(30661442-30661489)
chr2 (34-81)||(30670122-30670169)
[»] chr1 (6 HSPs)
chr1 (804-906)||(10410872-10410974)
chr1 (803-906)||(10416585-10416688)
chr1 (490-614)||(10411157-10411281)
chr1 (490-614)||(10416877-10417001)
chr1 (34-81)||(10411690-10411737)
chr1 (331-394)||(10417097-10417160)
[»] chr3 (1 HSPs)
chr3 (490-621)||(1153578-1153710)
[»] chr7 (1 HSPs)
chr7 (490-614)||(29624311-29624435)


Alignment Details
Target: chr5 (Bit Score: 983; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 983; E-Value: 0
Query Start/End: Original strand, 6 - 1033
Target Start/End: Original strand, 35435405 - 35436435
Alignment:
Q  6 caaatttaagatatctaaatctgggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggca 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435405 caaatttaagagatctaaatctgggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggca 35435504  T
Q  106 aaaccaattatttggtactcttccatcaaatatgcatcttgtttttcctaatcttagatcatttttggtgggagagaaccacataagcggaactttgccg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435505 aaaccaattatttggtactcttccatcaaatatgcatcttgtttttcctaatcttagatcatttttggtgggagagaaccacataagcggaactttgccg 35435604  T
Q  206 ttgtcaatatcaaatatcaccggtctgaaatggttcgatatatccattaacaattttcatgggccagtacctccaaccttggggaacttgaacaaacttg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  35435605 ttgtcaatatcaaatatcaccggtctgaaatggttcgatatatccattaacaattttcatgggccagtacctccaaccttggggcacttgaacaaactta 35435704  T
Q  306 agaggtttgccattggttataatggttttgggagtggaagagctcatgatttggatttcatttcctcattgaccaattgtactcaattgcaagttcttaa 405  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435705 ggaggtttgacattggttataatggttttgggagtggaagagctcatgatttggatttcatttcctcattgaccaattgtactcaattgcaagttcttaa 35435804  T
Q  406 tttgaagtataatagatttggcggtacaatgacagatcttatgaccaacttctctaccactctcaattggctaagtatggcaggtaatcaaatatatgga 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435805 tttgaagtataatagatttggcggtacaatgacagatcttatgaccaacttctctaccactctcaattggctaagtatggcaggtaatcaaatatatgga 35435904  T
Q  506 gaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagattcaattggaaagctta 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35435905 gaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagattcaattggaaagctta 35436004  T
Q  606 cgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattgttattggcaatcttaccaagttgtctgagttttatctacatac 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35436005 cgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattgttattggcaatcttaccaagttgtctgagttttatctacatac 35436104  T
Q  706 taataaattagaaggaaacgttccatcgactctaagatattgcaccaagttgcaatcatttggtgtttctgacaacaacttgagtggccacatacctgat 805  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35436105 taataaattagaaggaaacgttccatcgactcttagatattgcaccaagttgcaatcatttggtgtttctgacaacaacttgagtggccacatacctgat 35436204  T
Q  806 caaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatcttt 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35436205 caaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatcttt 35436304  T
Q  906 ccatattgaatctatacacaaacaagttgtccggtcaaattcccaatgaacttgctggttgtttgacactaattgagcttatg-tgcagag-aacttttt 1003  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35436305 ccatattgaatctatacacaaacaagttgtccggtcaaattcccaatgaacttgctggttgtttgacactaattgagcttatgttgcagagaaacttttt 35436404  T
Q  1004 ccatggaagtata-cttccttcttgggctcc 1033  Q
    ||||||||||||| |||||||||||||||||    
T  35436405 ccatggaagtataccttccttcttgggctcc 35436435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 35422060 - 35422270
Alignment:
Q  6 caaatttaagatatctaaatctgggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggca 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35422060 caaatttaagagatctaaatctgggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggca 35422159  T
Q  106 aaaccaattatttggtactcttccatcaaatatgcatcttgtttttcctaatcttagatcatttttggtgggagagaaccacataagcggaactttgccg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  35422160 aaaccaattatttggtactcttccatcaaatatgcatcttgtttttcctaatcttagatcatttttggtgggagggaaccacataagcggaacttttccg 35422259  T
Q  206 ttgtcaatatc 216  Q
    |  ||||||||    
T  35422260 tgttcaatatc 35422270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 804 - 948
Target Start/End: Original strand, 35754007 - 35754151
Alignment:
Q  804 atcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatct 903  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||  | ||||||| || ||||| ||| ||||||||||    
T  35754007 atcaaacatttggctatctagaaggcttaataaatcttgacttgtccaacaacttcttgactggtttccttccttcggagtttggcaacatgaagcatct 35754106  T
Q  904 ttccatattgaatctatacacaaacaagttgtccggtcaaattcc 948  Q
    ||||||||||||||||||| |||||| ||| || ||| |||||||    
T  35754107 ttccatattgaatctatactcaaacaggttttctggtgaaattcc 35754151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 491 - 948
Target Start/End: Original strand, 35422545 - 35422999
Alignment:
Q  491 aatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagatt 590  Q
    ||||||||||| ||||  || ||||||||  | |||||||||||   ||||||| | || |||||||||  ||||||||| |||||||  |||||| |||    
T  35422545 aatcaaatatacggagtgatacctgaaagtttgggacaactaatcaatttaactgaattcgatatgatgaggaatttccttgagggaaagattccaaatt 35422644  T
Q  591 caattggaaagcttacgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattgttattggcaatcttaccaagttgtctga 690  Q
    |||||||||| || | |||||||| |||| |  | |||||| ||||||| |||||||| || ||| ||| |   ||||| || ||||| | ||||| |||    
T  35422645 caattggaaaactgaagaatctaggaagactggtcttgcaacaaaacagtttatctggtaatattactact---attggtaaccttactacgttgtttga 35422741  T
Q  691 gttttatctacatactaataaattagaaggaaacgttccatcgactctaagatattgcaccaagttgcaatcatttggtgtttctgacaacaacttgagt 790  Q
      ||||||| ||||| ||||| || |||||||   |||||   || || ||| |||||||  | || ||  |||||||| |||||   || || ||||||    
T  35422742 actttatcttcataccaataattttgaaggaagtattccaataacccttagacattgcactcaattacagacatttggtatttctacgaataatttgagt 35422841  T
Q  791 ggccacatacctgatcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggta 890  Q
    ||  | |||||||||||   ||||||||||||||||| ||||||||| ||||||||||| || |||||  |||| |||||| |||||| ||  |||||||    
T  35422842 ggtgatatacctgatcatctatttggctatctagaaaatttaataaaccttgacttgtctaataactctctgactggtccccttcctttagggtttggta 35422941  T
Q  891 acttgaagcatctttccatattgaatctatacacaaacaagttgtccggtcaaattcc 948  Q
    ||||||||||||||||  ||||| | |||||   |||||||||||| ||| |||||||    
T  35422942 acttgaagcatctttctctattgtacctatatgaaaacaagttgtctggtgaaattcc 35422999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 572 - 906
Target Start/End: Original strand, 35375364 - 35375698
Alignment:
Q  572 gagggaacaattccagattcaattggaaagcttacgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattgttattggca 671  Q
    |||||||||||||| || |||||||||||||||| |||||||| || |||    ||| | |  |||| ||||||||| || |||||||| || |||||||    
T  35375364 gagggaacaattcctgaatcaattggaaagcttaagaatctaggaatattgggcttggatggtaacaaattatctggtaaaattcctatagtcattggca 35375463  T
Q  672 atcttaccaagttgtctgagttttatctacatactaataaattagaaggaaacgttccatcgactctaagatattgcaccaagttgcaatcatttggtgt 771  Q
    |||||||    ||||||||  |   ||||  || ||||||||| ||||||| | ||||||  ||  ||||| |||||||||| |||||   |||   | |    
T  35375464 atcttacagtcttgtctgaactaggtctatctagtaataaattggaaggaagcattccatttaccataagaaattgcaccaaattgcagaaattatattt 35375563  T
Q  772 ttctgacaacaacttgagtggccacatacctgatcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtccc 871  Q
    || |   ||||||||||||||  | || ||  ||||||||||||||||||||||  |||||||| |||||| |||  |||| || |||||||||||||||    
T  35375564 ttatagtaacaacttgagtggtgatattcccaatcaaacatttggctatctagatggtttaatatatcttggcttagccaataattccttgaccggtccc 35375663  T
Q  872 attccttcagaatttggtaacttgaagcatctttc 906  Q
    ||||||||||| |||||||||||||| || |||||    
T  35375664 attccttcagagtttggtaacttgaaacaactttc 35375698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 563 - 906
Target Start/End: Original strand, 35365812 - 35366155
Alignment:
Q  563 aatttcctagagggaacaattccagattcaattggaaagcttacgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattg 662  Q
    |||||||| ||||||||||| ||| |||||||||||||| | |  |||||||| | |||  | |||  |||||||| ||||| ||| || ||||||| |     
T  35365812 aatttccttgagggaacaataccaaattcaattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaata 35365911  T
Q  663 ttattggcaatcttaccaagttgtctgagttttatctacatactaataaattagaaggaaacgttccatcgactctaagatattgcaccaagttgcaatc 762  Q
     ||||||||||||||| | |||||||||  | ||| |  |||  ||||||||  |||||| | ||||||  || || |||||||| ||||| ||||| ||    
T  35365912 gtattggcaatcttactatgttgtctgaactatatttgaatagaaataaatttcaaggaagcattccatttaccctgagatattgtaccaacttgcagtc 35366011  T
Q  763 atttggtgtttctgacaacaacttgagtggccacatacctgatcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttg 862  Q
    |||     ||||||| ||||| |||||||| || |||||  | |||||| || |||||||||||| |||| || | ||||||||||| |  |||||| ||    
T  35366012 attaaacatttctgataacaaattgagtggtcatatacccaaccaaacaattagctatctagaaaatttagtagaccttgacttgtctataaactccctg 35366111  T
Q  863 accggtcccattccttcagaatttggtaacttgaagcatctttc 906  Q
    || || ||| |||||| ||  |||||||||||||||||| ||||    
T  35366112 actggcccccttcctttagggtttggtaacttgaagcatatttc 35366155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 804 - 906
Target Start/End: Original strand, 35405782 - 35405884
Alignment:
Q  804 atcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatct 903  Q
    ||||||||||||| |||||| |  ||||||||  |||| |||||  ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||    
T  35405782 atcaaacatttggatatctaaagggtttaatatttctttacttgaacaacaactccttgacaggtcccattccttcagattttggtaacttgaagcaact 35405881  T
Q  904 ttc 906  Q
    |||    
T  35405882 ttc 35405884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 490 - 621
Target Start/End: Original strand, 35753693 - 35753824
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 589  Q
    ||||||||||||||| || || |||| || |||||||||||||| ||||||| ||  ||| |||||   | | |||||||| |||||| |||||||| ||    
T  35753693 taatcaaatatatggggagatacctggaacaattggacaactaactggtttatctttcttagatattgggtacaatttccttgagggaccaattccaaat 35753792  T
Q  590 tcaattggaaagcttacgaatctagtaagatt 621  Q
    ||||||||||||||||  ||||||||||||||    
T  35753793 tcaattggaaagcttaaaaatctagtaagatt 35753824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 35753228 - 35753422
Alignment:
Q  25 tctgggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggcaaaaccaattatttggtact 124  Q
    |||| |||||||| |||| || |||||||| ||||||||||||||||||||||| || ||| |   | |  | || |    ||||||||| ||||||  |    
T  35753228 tctgagttcaaatcatttgtcaggtgaaattcctcattctctttacaatctatccaatattcaatatcttgttctcgcaggaaaccaattgtttggtcgt 35753327  T
Q  125 cttccatcaaatatgcatcttgtttttcctaatcttagatcatttttggtgggagagaaccacataagcggaactttgccgttgtcaatatcaaa 219  Q
    ||||||||||||||| ||||||||||||| | ||||| |  ||| ||||| |||| |||| |  ||||||||||||| ||||  |||||||||||    
T  35753328 cttccatcaaatatgaatcttgtttttcccagtcttaaagaattcttggtaggagggaacaatttaagcggaacttttccgtcttcaatatcaaa 35753422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 35404995 - 35405051
Alignment:
Q  25 tctgggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaa 81  Q
    |||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  35404995 tctgagttcaaataatttgtcaggtgaaatccctcattctctttacaacctatcaaa 35405051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 35365283 - 35365409
Alignment:
Q  34 aaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaattta-tgttttcatccttgggcaaaaccaattatttggtactcttccatc 132  Q
    ||||||||| || |||||||| |||||||| |||||||| |||||||| ||  | | |||| ||| |||||  |||| | ||||| |||| |||||||||    
T  35365283 aaataatttgtcaggtgaaattcctcattcactttacaacctatcaaatatgaaatcttttgatc-ttggggtaaacaacttattcggtagtcttccatc 35365381  T
Q  133 aaatatgcatcttgtttttcctaatctt 160  Q
    ||||||| ||||||||||||| ||||||    
T  35365382 aaatatgaatcttgtttttcccaatctt 35365409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 35374823 - 35374953
Alignment:
Q  31 ttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggcaaaaccaattatttggtactcttcca 130  Q
    |||||||||||| || |||||||| ||||||||||||||||| |||||||| ||| | |||||    ||||||  |||| | ||||  |||| |||||||    
T  35374823 ttcaaataatttgtcaggtgaaattcctcattctctttacaacctatcaaatattcaagtttttgatcttgggttaaacaacttatccggtagtcttcca 35374922  T
Q  131 tcaaatatgcatcttgtttttcctaatctta 161  Q
     | ||| || ||||||||||||| |||||||    
T  35374923 accaatctgaatcttgtttttcccaatctta 35374953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 563 - 605
Target Start/End: Original strand, 35405541 - 35405583
Alignment:
Q  563 aatttcctagagggaacaattccagattcaattggaaagctta 605  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  35405541 aatttctttgagggaacaattccagattcaattggaaagctta 35405583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 563 - 678
Target Start/End: Original strand, 13564313 - 13564428
Alignment:
Q  563 aatttcctagagggaacaattccagattcaattggaaagcttacgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattg 662  Q
    |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||  | ||||||||||||| ||||||||| || ||||||| |     
T  13564313 aatttccttgagggaacaattccagattcaattggaatgcttaagaatctagtaaaattggtcttgcaagaaaacaaattatctggtaacattcctacta 13564412  T
Q  663 ttattggcaatcttac 678  Q
    ||||||||||||||||    
T  13564413 ttattggcaatcttac 13564428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 13563780 - 13563957
Alignment:
Q  29 ggttcaaataatttttcgggtgaaatccctcattctctttacaatctatcaaaaatttatgttttcatccttgggcaaaaccaattatttggtactcttc 128  Q
    |||||||||||||| || |||||||| ||||||||||||||||| |||| ||| ||| |  ||||    ||||||   ||| | ||||| |||| |||||    
T  13563780 ggttcaaataatttgtcaggtgaaattcctcattctctttacaacctatgaaatattcaaattttagatcttggggggaacaagttattcggtagtcttc 13563879  T
Q  129 catcaaatatgcatcttgtttttcctaatcttagatcatttttggtgggagagaaccacataagcggaactttgccgt 206  Q
    ||||||||| | |||||| |||||| ||||||  || ||| ||||| ||||||||||| ||||  |||||||| ||||    
T  13563880 catcaaatacggatcttgattttccaaatcttgaataattcttggtcggagagaaccaaataacgggaacttttccgt 13563957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 8e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 804 - 919
Target Start/End: Original strand, 30662212 - 30662327
Alignment:
Q  804 atcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatct 903  Q
    ||||||||||||||||||||||   |||| || ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||    
T  30662212 atcaaacatttggctatctagatgctttactatatcttgacttgtccaacaacttcttgaccggccccattccttcagagtttggtaacttgaagcaact 30662311  T
Q  904 ttccatattgaatcta 919  Q
    |||   ||||||||||    
T  30662312 ttctcaattgaatcta 30662327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 804 - 919
Target Start/End: Original strand, 30634483 - 30634598
Alignment:
Q  804 atcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatct 903  Q
    ||||||||||||||||||||||   |||||||  |||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||    
T  30634483 atcaaacatttggctatctagatgctttaatatttcttgacttgtctaacaacttcttgaccggccccattccttcagagtttggtaacttgaagcaact 30634582  T
Q  904 ttccatattgaatcta 919  Q
    |||   ||||||||||    
T  30634583 ttctcaattgaatcta 30634598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 804 - 906
Target Start/End: Original strand, 30670892 - 30670994
Alignment:
Q  804 atcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatct 903  Q
    ||||||||||||||||||||||   |||||||  | |||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||| ||    
T  30670892 atcaaacatttggctatctagatgctttaatattttttgacttgtctaacaacttattgaccggccccattccttcagaatttggtaacttgaagcaact 30670991  T
Q  904 ttc 906  Q
    |||    
T  30670992 ttc 30670994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 490 - 614
Target Start/End: Original strand, 30661898 - 30662022
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatat-gatggagaatttcctagagggaacaattccaga 588  Q
    |||| ||||||||||||  |||||  ||| ||||||||||||||||||||||  |  ||| ||| | |||  | |||||||| |||||||||||||||||    
T  30661898 taataaaatatatggagtgatcccgaaaacaattggacaactaattggtttagttgccttagattttgata-acaatttccttgagggaacaattccaga 30661996  T
Q  589 ttcaattggaaagcttacgaatctag 614  Q
    ||||||||||||||||| ||||||||    
T  30661997 ttcaattggaaagcttaagaatctag 30662022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 490 - 614
Target Start/End: Original strand, 30634169 - 30634293
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 589  Q
    |||| ||||||||||||  |||||  ||| ||||||||||||||||||||||  |  |||    || |  || ||||| || ||||||||||||||||||    
T  30634169 taataaaatatatggagtgatcccgaaaacaattggacaactaattggtttagttgccttaaccattagtgataatttacttgagggaacaattccagat 30634268  T
Q  590 tcaattggaaagcttacgaatctag 614  Q
    |||||||||||||||| ||||||||    
T  30634269 tcaattggaaagcttaagaatctag 30634293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 614
Target Start/End: Original strand, 30670578 - 30670702
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 589  Q
    |||||||||||||||||  |||||  ||| ||||||||||||||||||||||  |  |||    || |   | ||||| || |||||| |||||||||||    
T  30670578 taatcaaatatatggagtgatcccgaaaacaattggacaactaattggtttagttgccttaaccattagttataatttacttgagggagcaattccagat 30670677  T
Q  590 tcaattggaaagcttacgaatctag 614  Q
    |||||||||||||||| ||||||||    
T  30670678 tcaattggaaagcttaagaatctag 30670702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 30633713 - 30633760
Alignment:
Q  34 aaataatttttcgggtgaaatccctcattctctttacaatctatcaaa 81  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||    
T  30633713 aaataatttgtcaggtgaaatccctcattctctctacaacctatcaaa 30633760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 614
Target Start/End: Original strand, 30659873 - 30659924
Alignment:
Q  563 aatttcctagagggaacaattccagattcaattggaaagcttacgaatctag 614  Q
    ||||| || ||||||||||||||||||| || ||||||||||| ||||||||    
T  30659873 aatttacttgagggaacaattccagatttaactggaaagcttaagaatctag 30659924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 30661442 - 30661489
Alignment:
Q  34 aaataatttttcgggtgaaatccctcattctctttacaatctatcaaa 81  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||    
T  30661442 aaataatttgtcaggtgaaatccctcattctctctacaacctatcaaa 30661489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 30670122 - 30670169
Alignment:
Q  34 aaataatttttcgggtgaaatccctcattctctttacaatctatcaaa 81  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||    
T  30670122 aaataatttgtcaggtgaaatccctcattctctctacaacctatcaaa 30670169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 804 - 906
Target Start/End: Complemental strand, 10410974 - 10410872
Alignment:
Q  804 atcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatct 903  Q
    ||||||||||||||||||||||  |||||||| || |||||||  |||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10410974 atcaaacatttggctatctagatggtttaatatatattgacttagccaataattccttgaccggtcccattccttcagagtttggtaacttgaagcatct 10410875  T
Q  904 ttc 906  Q
    |||    
T  10410874 ttc 10410872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 803 - 906
Target Start/End: Complemental strand, 10416688 - 10416585
Alignment:
Q  803 gatcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatc 902  Q
    |||||||||||||||||| ||||  ||||||||  |||||| ||  |||| || |||||| ||||||||||||||||||| |||||||| |||||||| |    
T  10416688 gatcaaacatttggctatttagatggtttaatatttcttgaattagccaataattccttgtccggtcccattccttcagagtttggtaatttgaagcaac 10416589  T
Q  903 tttc 906  Q
    ||||    
T  10416588 tttc 10416585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 490 - 614
Target Start/End: Complemental strand, 10411281 - 10411157
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 589  Q
    |||||||||||||||||  || || ||||||||||||||||| ||||||||||||  |||  ||||     | |||| ||| || |||||||||||| ||    
T  10411281 taatcaaatatatggagtgataccagaaagaattggacaactgattggtttaactgtcttaaatattgctaacaattcccttgatggaacaattccatat 10411182  T
Q  590 tcaattggaaagcttacgaatctag 614  Q
    ||||||||||| |||| ||||||||    
T  10411181 tcaattggaaatcttaagaatctag 10411157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 490 - 614
Target Start/End: Complemental strand, 10417001 - 10416877
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 589  Q
    |||||||||||||||||  || ||||||| |||||| |||||||||||||||| |  |||  | ||    || |||||  | |||||||||||||| |||    
T  10417001 taatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgcagacaatttatttgagggaacaattcctgat 10416902  T
Q  590 tcaattggaaagcttacgaatctag 614  Q
    |||||||||||||||| ||||||||    
T  10416901 tcaattggaaagcttaagaatctag 10416877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 10411737 - 10411690
Alignment:
Q  34 aaataatttttcgggtgaaatccctcattctctttacaatctatcaaa 81  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||||    
T  10411737 aaataatttgtcaggtgaaatccctcattctctctacaacctatcaaa 10411690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 10417160 - 10417097
Alignment:
Q  331 ttttgggagtggaagagctcatgatttggatttcatttcctcattgaccaattgtactcaattg 394  Q
    ||||||||||||| ||||||| |||||||||||  |||| || |||||||| ||||| ||||||    
T  10417160 ttttgggagtggaggagctcacgatttggattttctttcatcgttgaccaactgtacccaattg 10417097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 490 - 621
Target Start/End: Original strand, 1153578 - 1153710
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatgg--agaatttcctagagggaacaattccag 587  Q
    |||||||||||||||||  || || |||||||||||||||||||| ||| ||||| ||||  ||||  |||  | |||||||| |||||||| ||||||     
T  1153578 taatcaaatatatggagtgataccagaaagaattggacaactaatcggtgtaacttacttaaatatattggaaataatttcctcgagggaacgattccaa 1153677  T
Q  588 attcaattggaaagcttacgaatctagtaagatt 621  Q
    ||||||| ||||| |||  |||||||||| ||||    
T  1153678 attcaatcggaaa-cttcagaatctagtacgatt 1153710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 614
Target Start/End: Complemental strand, 29624435 - 29624311
Alignment:
Q  490 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 589  Q
    |||||||||||||||||  || ||||||||||||||| |||||||   ||||||| ||||  | ||     | |||| ||| ||||||||||| ||| ||    
T  29624435 taatcaaatatatggagtcatacctgaaagaattggagaactaatcaatttaacttacttaaacatcggcaacaattaccttgagggaacaataccatat 29624336  T
Q  590 tcaattggaaagcttacgaatctag 614  Q
    |||||||||||||||| ||||||||    
T  29624335 tcaattggaaagcttaagaatctag 29624311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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