View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802-Insertion-4 (Length: 938)

Name: NF0802-Insertion-4
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802-Insertion-4
NF0802-Insertion-4
[»] chr3 (9 HSPs)
chr3 (6-937)||(46942898-46943809)
chr3 (506-583)||(31013114-31013191)
chr3 (513-577)||(37334952-37335016)
chr3 (672-722)||(48089484-48089534)
chr3 (365-421)||(34331563-34331619)
chr3 (528-582)||(35264324-35264378)
chr3 (536-582)||(42913180-42913226)
chr3 (640-717)||(47356307-47356385)
chr3 (528-577)||(50427190-50427239)
[»] chr1 (5 HSPs)
chr1 (458-570)||(7524157-7524273)
chr1 (599-717)||(7790662-7790782)
chr1 (648-717)||(6021749-6021819)
chr1 (695-739)||(20720739-20720783)
chr1 (528-583)||(47899371-47899426)
[»] chr8 (7 HSPs)
chr8 (461-582)||(32927939-32928064)
chr8 (689-769)||(15677910-15677991)
chr8 (529-577)||(4662825-4662873)
chr8 (674-717)||(4336346-4336389)
chr8 (536-583)||(26559863-26559910)
chr8 (536-577)||(7602046-7602087)
chr8 (545-582)||(35775528-35775565)
[»] chr6 (5 HSPs)
chr6 (528-583)||(46200-46255)
chr6 (673-722)||(33136579-33136628)
chr6 (507-582)||(765298-765373)
chr6 (679-717)||(2002567-2002605)
chr6 (496-569)||(29338523-29338596)
[»] chr5 (5 HSPs)
chr5 (505-583)||(14299421-14299499)
chr5 (666-738)||(13224708-13224780)
chr5 (640-717)||(27374353-27374431)
chr5 (672-722)||(43012677-43012727)
chr5 (689-737)||(39097188-39097237)
[»] chr7 (3 HSPs)
chr7 (672-768)||(45004878-45004975)
chr7 (645-715)||(40561825-40561896)
chr7 (513-583)||(40491681-40491751)
[»] chr4 (7 HSPs)
chr4 (645-739)||(46344899-46344994)
chr4 (679-768)||(49138937-49139027)
chr4 (631-717)||(25318992-25319080)
chr4 (344-436)||(46344923-46345014)
chr4 (599-687)||(30357487-30357577)
chr4 (662-716)||(33560656-33560710)
chr4 (527-576)||(34155810-34155859)
[»] scaffold0168 (1 HSPs)
scaffold0168 (679-768)||(31719-31809)
[»] chr2 (3 HSPs)
chr2 (645-723)||(36987178-36987258)
chr2 (629-723)||(42650210-42650305)
chr2 (672-717)||(7630361-7630406)
[»] scaffold0036 (1 HSPs)
scaffold0036 (536-582)||(864-910)


Alignment Details
Target: chr3 (Bit Score: 769; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 6 - 937
Target Start/End: Complemental strand, 46943809 - 46942898
Alignment:
Q  6 cacgtaaatggaacatttgttcttttgccaggatatgtaaaacccaatattcttttccattgtgttggaattcgggaggtgagtgcctttatgttacctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943809 cacgtaaatggaacatttgttcttttgccaggatatgtaaaacccaatattcttttccattgtgttggaattcgggaggtgagtgcctttatgttacctt 46943710  T
Q  106 gtggccaattatacatatataaattaaccgtacatgggtgggtatacaaatataatgcataatacatgcatgcatgtgtccttgtccttcatttttcttc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943709 gtggccaattatacatatataaattaaccgtacatgggtgggtatacaaatataatgcataatacatgcatgcatgtgtccttgtccttcatttttcttc 46943610  T
Q  206 ttcatcaccttcaataatttaaatgtgttttgttgagtcacaaaaattgattttgattaaaatccagttgaatgtaaaattatttgactttgaatatatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46943609 ttcatcaccttcaataatttaaatgtgttttgttgagtcacaaaaattgattttgattaaaatcgagttgaatgtaaaattatttgactttgaatatatt 46943510  T
Q  306 caagcaaaagtgagttgaattataataagtttatgttttgttccacgttctagagagtccaaaattgattatgaagatgtaaaattgactctaacatttt 405  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46943509 caagcaaaagtgagttgaattataataagtctatgtttggttccacattctagagagcccaaaattgattatgaagatgtaaaattgactctaacatttt 46943410  T
Q  406 ttgttgcttttaagtatgatcgattttgccttcggtatttattctacttgagttgatttttactcacaaatatatagttcaactcactattaaatataat 505  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943409 ttgttgtttttaagtatgattgattttgccttcggtatttattctacttgagttgatttttactcacaaatatatagttcaactcactattaaatataat 46943310  T
Q  506 caaacacaaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattcacttaaaattaattcaaatcaaacatacactaaattt 605  Q
    ||||||||||| ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||                   |||||||||||||||||    
T  46943309 caaacacaaattactatacctacaactcaattttagtcagaatcaattttacagaatcaattca------------------aaaacatacactaaattt 46943228  T
Q  606 gtgtgtgaaatcaattatgtaagcaaaagctaataatcataacttcaagtagaatcattctagaaacaaaattaattatactcgaaatcaaccaaacatg 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46943227 gtgtgtgaaatcaattatgtaagcaaaagctaataatcataacttcaagtagaatcattctaaaaacaaaattaattatactcgaaatcaaccaaacatg 46943128  T
Q  706 tcaaaatcaattgtacaacctataatcaattttgctccttttagaagtggtaccaaacatacatttggtccttgtgttgctatcatagttaattttacaa 805  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943127 tcaaaatcaattgtacaatctataatcaattttgctccttttagaagtgttaccaaacatacatttggtccttgtgttgctatcatagttaattttacaa 46943028  T
Q  806 aatcacgtcaagccattgtannnnnnnnngtaaaaactaccatttacaactttaataaatttattcaagagtctaatctaaaagattgatctactacatt 905  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943027 aatcacgtcaagccattgta--tttttttgtaaaaactaccatttacaactttaataaatttattcaagagtctaatctaaaagattgatctactacatt 46942930  T
Q  906 aggtaggagagtatatgagtgtatcacgtaca 937  Q
    ||||||||||| ||||| ||||||||||||||    
T  46942929 aggtaggagagcatatgtgtgtatcacgtaca 46942898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 583
Target Start/End: Original strand, 31013114 - 31013191
Alignment:
Q  506 caaacacaaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattcacttaaaattaattc 583  Q
    ||||||||||||||| |  |||||||||| |||||||  ||||||||||||| ||||||||||||| ||||| |||||    
T  31013114 caaacacaaatcactttatctacaactcacttttagtcggaatcaattttatggaatcaattcactcaaaatcaattc 31013191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 577
Target Start/End: Complemental strand, 37335016 - 37334952
Alignment:
Q  513 aaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattcacttaaaat 577  Q
    |||||||| | ||| ||||||| |||||||  |||||||||||||| ||||||||||||||||||    
T  37335016 aaatcactttaccttcaactcaattttagtcggaatcaattttatataatcaattcacttaaaat 37334952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 722
Target Start/End: Original strand, 48089484 - 48089534
Alignment:
Q  672 caaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtaca 722  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||| ||||    
T  48089484 caaaattaattatactcgagagcaaccaaacatgccaaaatcaattttaca 48089534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 34331563 - 34331619
Alignment:
Q  365 caaaattgattatgaagatgtaaaattgactctaacattttttgttgcttttaagta 421  Q
    |||||||||||||||||||| |||||| | |||||||| |||  |||||||||||||    
T  34331563 caaaattgattatgaagatgaaaaattaattctaacatatttgattgcttttaagta 34331619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 528 - 582
Target Start/End: Complemental strand, 35264378 - 35264324
Alignment:
Q  528 caactcagttttagttagaatcaattttatagaatcaattcacttaaaattaatt 582  Q
    ||||||| |||| |||| ||||||||||| |||||||||||||| ||||| ||||    
T  35264378 caactcacttttggttacaatcaattttacagaatcaattcactcaaaatcaatt 35264324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 536 - 582
Target Start/End: Original strand, 42913180 - 42913226
Alignment:
Q  536 ttttagttagaatcaattttatagaatcaattcacttaaaattaatt 582  Q
    ||||||||||||| ||||||||| |||||||||||| ||||| ||||    
T  42913180 ttttagttagaattaattttatacaatcaattcactcaaaatcaatt 42913226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 717
Target Start/End: Original strand, 47356307 - 47356385
Alignment:
Q  640 aatcataacttcaagtagaatc-attctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||| ||||||||||| ||||| |||||| | ||||||| ||||||||| || | ||||||||||| ||| ||||||||    
T  47356307 aatcttaacttcaagtggaatcgattctaaagacaaaatcaattatacttgatagcaaccaaacatatcataatcaatt 47356385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 577
Target Start/End: Original strand, 50427190 - 50427239
Alignment:
Q  528 caactcagttttagttagaatcaattttatagaatcaattcacttaaaat 577  Q
    ||||||| |||||| |||||||||||||| | | ||||||||||||||||    
T  50427190 caactcatttttagctagaatcaattttacaaattcaattcacttaaaat 50427239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 458 - 570
Target Start/End: Original strand, 7524157 - 7524273
Alignment:
Q  458 ttgatttttactcacaaatatatagttcaactcactattaaatataat-----caaacacaaatcactattcctacaactcagttttagttagaatcaat 552  Q
    ||||||||||| ||||||| |||||||||||||||| ||| ||| |||     ||||||||||||||| | |||  | |||| |||||||||||||||||    
T  7524157 ttgatttttacacacaaatttatagttcaactcacttttacata-aatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaat 7524255  T
Q  553 tttatagaatcaattcac 570  Q
    |||||||||||| |||||    
T  7524256 tttatagaatcagttcac 7524273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 717
Target Start/End: Original strand, 7790662 - 7790782
Alignment:
Q  599 taaatttgtgtgtgaaa-tcaattatgtaagcaaaagctaataatcataacttcaagtagaatc-attctagaaacaaaattaattatactcgaaatcaa 696  Q
    ||||||||||||| ||| ||||||||  || | ||| |||  |||||||||||||||||||||| |||||| | |||| || ||||||||| ||||| ||    
T  7790662 taaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattctaaagacaatatcaattatacttgaaattaa 7790761  T
Q  697 ccaaacatgtcaaaatcaatt 717  Q
    |||  ||||||| ||||||||    
T  7790762 ccacgcatgtcacaatcaatt 7790782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 717
Target Start/End: Complemental strand, 6021819 - 6021749
Alignment:
Q  648 cttcaagtagaatc-attctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||||||||||||| ||||||||  |||||| |||| |||| |||||||| ||||| ||||||||||||||    
T  6021819 cttcaagtagaatcgattctagaggcaaaatcaattctacttgaaatcaatcaaacttgtcaaaatcaatt 6021749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 739
Target Start/End: Complemental strand, 20720783 - 20720739
Alignment:
Q  695 aaccaaacatgtcaaaatcaattgtacaacctataatcaattttg 739  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||    
T  20720783 aaccaaacatgtcaaaatcaattctacaccttataatcaattttg 20720739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 583
Target Start/End: Original strand, 47899371 - 47899426
Alignment:
Q  528 caactcagttttagttagaatcaattttatagaatcaattcacttaaaattaattc 583  Q
    ||||||| ||||||| ||||||||||||| | |||||||||||| ||||| |||||    
T  47899371 caactcacttttagtaagaatcaattttacaaaatcaattcactcaaaatcaattc 47899426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 461 - 582
Target Start/End: Original strand, 32927939 - 32928064
Alignment:
Q  461 atttttactcacaaatatatagttcaactcactatta----aatataatcaaacacaaatcactattcctacaactcagttttagttagaatcaatttta 556  Q
    |||||||| ||||||| |||||||||||||||| |||    ||| ||  ||||||||||||||| | ||| ||||||| ||||||| |||||||||||||    
T  32927939 atttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaatttta 32928038  T
Q  557 tagaatcaattcacttaaaattaatt 582  Q
     | ||||||||| || ||||| ||||    
T  32928039 cataatcaattccctcaaaatcaatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 769
Target Start/End: Original strand, 15677910 - 15677991
Alignment:
Q  689 gaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaattttgctccttttagaagtggtaccaaacatacat 769  Q
    |||| ||||||||||||||| ||||||||||||||| | | ||||||||||   || | ||||||||| |||||||||||||    
T  15677910 gaaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaacatacat 15677991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 577
Target Start/End: Complemental strand, 4662873 - 4662825
Alignment:
Q  529 aactcagttttagttagaatcaattttatagaatcaattcacttaaaat 577  Q
    |||||||||||||| ||||||||||||| | |||||||||||| |||||    
T  4662873 aactcagttttagtcagaatcaattttacataatcaattcactcaaaat 4662825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 717
Target Start/End: Complemental strand, 4336389 - 4336346
Alignment:
Q  674 aaattaattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||| |||||||||||| | ||||||||||||||||||||||||    
T  4336389 aaatcaattatactcgagaccaaccaaacatgtcaaaatcaatt 4336346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 583
Target Start/End: Complemental strand, 26559910 - 26559863
Alignment:
Q  536 ttttagttagaatcaattttatagaatcaattcacttaaaattaattc 583  Q
    ||||||||||||||||||||||  |||||||||||| ||||| |||||    
T  26559910 ttttagttagaatcaattttatcaaatcaattcactcaaaatcaattc 26559863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 7602087 - 7602046
Alignment:
Q  536 ttttagttagaatcaattttatagaatcaattcacttaaaat 577  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  7602087 ttttagttcgaatcaattttataaaatcaattcactcaaaat 7602046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 582
Target Start/End: Original strand, 35775528 - 35775565
Alignment:
Q  545 gaatcaattttatagaatcaattcacttaaaattaatt 582  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  35775528 gaatcagttttatagaatcaattcatttaaaattaatt 35775565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 528 - 583
Target Start/End: Complemental strand, 46255 - 46200
Alignment:
Q  528 caactcagttttagttagaatcaattttatagaatcaattcacttaaaattaattc 583  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  46255 caactcacttttagttagaatcaattttacagaatcaattcactcaaaatcaattc 46200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 722
Target Start/End: Original strand, 33136579 - 33136628
Alignment:
Q  673 aaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtaca 722  Q
    ||||| |||||||||||| | |||||||||||||||||||||||| ||||    
T  33136579 aaaatcaattatactcgagagcaaccaaacatgtcaaaatcaattataca 33136628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Complemental strand, 765373 - 765298
Alignment:
Q  507 aaacacaaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattcacttaaaattaatt 582  Q
    |||||||||||||| | | | ||||| | ||||||||||||||||||||| | ||||| |||||| ||||| ||||    
T  765373 aaacacaaatcactttactttcaacttacttttagttagaatcaattttacacaatcatttcactcaaaatcaatt 765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 679 - 717
Target Start/End: Original strand, 2002567 - 2002605
Alignment:
Q  679 aattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  2002567 aattctactcgaaaacaaccaaacatgtcaaaatcaatt 2002605  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 569
Target Start/End: Complemental strand, 29338596 - 29338523
Alignment:
Q  496 taaatataatcaaacacaaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattca 569  Q
    ||||||||  |||||| |||||||| || | |||||||| ||||| | ||||||||||||| | ||||||||||    
T  29338596 taaatatatccaaacataaatcactttttcaacaactcatttttaataagaatcaattttaaaaaatcaattca 29338523  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 583
Target Start/End: Original strand, 14299421 - 14299499
Alignment:
Q  505 tcaaacacaaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattcacttaaaattaattc 583  Q
    |||||||||||||||| | ||| ||||||| |||||  |||||||||||||| | |||||||||||| ||||| |||||    
T  14299421 tcaaacacaaatcactttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaaataaattc 14299499  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 738
Target Start/End: Original strand, 13224708 - 13224780
Alignment:
Q  666 tagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaatttt 738  Q
    |||||||||||| ||||||||||| || || ||||||||||||||||||||| |||| | ||| ||||||||||    
T  13224708 tagaaacaaaatcaattatactcggaa-catccaaacatgtcaaaatcaattatacatctctagaatcaatttt 13224780  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 640 - 717
Target Start/End: Original strand, 27374353 - 27374431
Alignment:
Q  640 aatcataacttcaagtagaatca-ttctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||| |||||||||||||||||| ||||  |  ||||||||||| |||| |||| ||||||||||||||| || |||||    
T  27374353 aatcctaacttcaagtagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcagaaacaatt 27374431  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 672 - 722
Target Start/End: Complemental strand, 43012727 - 43012677
Alignment:
Q  672 caaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtaca 722  Q
    |||||| |||| ||||| ||||||| |||||||||||||||||||| ||||    
T  43012727 caaaatcaattctactctaaatcaaacaaacatgtcaaaatcaattttaca 43012677  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 737
Target Start/End: Complemental strand, 39097237 - 39097188
Alignment:
Q  689 gaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaattt 737  Q
    |||| |||||||||||||||||||||||| |||| | |||||||||||||    
T  39097237 gaaaccaaccaaacatgtcaaaatcaattctacacctctataatcaattt 39097188  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 768
Target Start/End: Complemental strand, 45004975 - 45004878
Alignment:
Q  672 caaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaattttgctccttttagaagtggtaccaaacataca 768  Q
    |||||| ||||||||| || |  ||||||||||||||||||||||| |||| | ||| |||||||||||  |||||||||||||  |||||| |||||    
T  45004975 caaaatcaattatactagagagtaaccaaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaatataca 45004878  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 645 - 715
Target Start/End: Original strand, 40561825 - 40561896
Alignment:
Q  645 taacttcaagtagaatca-ttctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaa 715  Q
    |||||||||||||||||| |||| |||  ||||| |||||||||| | || |||||||||||||||||||||    
T  40561825 taacttcaagtagaatcaattcttgaagaaaaataaattatactctagatgaaccaaacatgtcaaaatcaa 40561896  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 583
Target Start/End: Original strand, 40491681 - 40491751
Alignment:
Q  513 aaatcactattcctacaactcagttttagttagaatcaattttatagaatcaattcacttaaaattaattc 583  Q
    |||||||| | ||| ||||||| ||||||| | ||||||||||| |||||||||||||| ||||| |||||    
T  40491681 aaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattc 40491751  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 645 - 739
Target Start/End: Original strand, 46344899 - 46344994
Alignment:
Q  645 taacttcaagtagaatcattctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaattttg 739  Q
    |||||||||||||||| ||| | ||  |||||| ||||||||| |||| ||||||||||||||| ||| |||| |||| | | |||||||||||||    
T  46344899 taacttcaagtagaataattatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaattttg 46344994  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 768
Target Start/End: Original strand, 49138937 - 49139027
Alignment:
Q  679 aattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaattttgctccttttagaagtggtaccaaacataca 768  Q
    |||| |||| |||| ||||||||||||||| |||||||| |||| | ||| |||||||||||  |  ||||||||||| ||||||||||||    
T  49138937 aattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacataca 49139027  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 717
Target Start/End: Complemental strand, 25319080 - 25318992
Alignment:
Q  631 aaagctaataatcataacttcaagt-agaatca-ttctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||||||  |||| || |||||||| ||||||| |||| || ||||||| |||| ||||||| | ||||||||||||||||||||||||    
T  25319080 aaagctacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaatt 25318992  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 344 - 436
Target Start/End: Complemental strand, 46345014 - 46344923
Alignment:
Q  344 tgttccacgttctagagagtccaaaattgattatgaagatgtaaaattgactctaacattttttgttgcttttaagtatgatcgattttgcct 436  Q
    |||||||| |||||||| | ||||||||||||||| || |||| |||| | ||| |||| ||| |||||||| |||||| || ||||||||||    
T  46345014 tgttccac-ttctagagggcccaaaattgattatggaggtgtataattaattctgacatgtttggttgctttcaagtataattgattttgcct 46344923  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 30357577 - 30357487
Alignment:
Q  599 taaatttgtgtgtgaaa-tcaattatgtaagcaaaagctaataatcataacttcaagtagaatc-attctagaaacaaaattaattatact 687  Q
    ||||||||||||| ||| |||||||| ||| |||||||||  ||||| | |||||||||||||| |||||| | | ||||| |||||||||    
T  30357577 taaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattctaaagataaaatcaattatact 30357487  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 716
Target Start/End: Original strand, 33560656 - 33560710
Alignment:
Q  662 attctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaat 716  Q
    ||||||||  |||||| |||| ||||||| | |||||||||||||||||||||||    
T  33560656 attctagaggcaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaat 33560710  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 576
Target Start/End: Original strand, 34155810 - 34155859
Alignment:
Q  527 acaactcagttttagttagaatcaattttatagaatcaattcacttaaaa 576  Q
    |||||||| ||||||||||||||||||||| | ||| |||||||| ||||    
T  34155810 acaactcacttttagttagaatcaattttacataattaattcactcaaaa 34155859  T

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Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 768
Target Start/End: Complemental strand, 31809 - 31719
Alignment:
Q  679 aattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaac-ctataatcaattttgctccttttagaagtggtaccaaacataca 768  Q
    |||| ||||||| | ||||||||||||||| |||||||| |||| | ||| ||||||||||| ||  | ||||||||| ||||||||||||    
T  31809 aattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacataca 31719  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 645 - 723
Target Start/End: Original strand, 36987178 - 36987258
Alignment:
Q  645 taacttcaagt-agaatcatt-ctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaa 723  Q
    ||||||||||| ||||||||| || ||| |||||| |||||||||| |||  | ||||||||||||||||||||| |||||    
T  36987178 taacttcaagttagaatcatttctggaagcaaaatcaattatactcaaaagaatccaaacatgtcaaaatcaattctacaa 36987258  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 723
Target Start/End: Complemental strand, 42650305 - 42650210
Alignment:
Q  629 caaaagctaataatcataacttcaagtagaatc-attctagaaacaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtacaa 723  Q
    |||||||||  ||| |||||||||||||||||| || ||| |||| |||| |||||||||  |||||| ||||||||   |||||||||| |||||    
T  42650305 caaaagctacaaattataacttcaagtagaatcaatcctacaaacgaaatcaattatactttaaatcatccaaacatcataaaatcaattctacaa 42650210  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 717
Target Start/End: Complemental strand, 7630406 - 7630361
Alignment:
Q  672 caaaattaattatactcgaaatcaaccaaacatgtcaaaatcaatt 717  Q
    |||||| |||| |||| |||| ||||||||||||||||||||||||    
T  7630406 caaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaatt 7630361  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 536 - 582
Target Start/End: Complemental strand, 910 - 864
Alignment:
Q  536 ttttagttagaatcaattttatagaatcaattcacttaaaattaatt 582  Q
    |||||||| |||||||||||| |||||||||||| ||||||| ||||    
T  910 ttttagttggaatcaattttagagaatcaattcatttaaaatcaatt 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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