View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802-Insertion-5 (Length: 854)
Name: NF0802-Insertion-5
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 14 - 799
Target Start/End: Original strand, 26968341 - 26969134
Alignment:
| Q |
14 |
tagagtacaaacaaagtgagtagattatcttagtaaccagaatagaatagccctgcaacctttaattcacttgtactagggccacacaaaaaggcacacc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
26968341 |
tagagtacaaacaaagtgagtagattatcttagtaaccagaatagaatagccctgcaacctttagttcacttgtgctagggccacacaaaaaggcacacc |
26968440 |
T |
|
| Q |
114 |
attgttaatgcaggtcctcgtcattggatttttaattaaacattgatctatactttaatcgaaaatccaaagacatcttttatttttgtagatgtttcat |
213 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26968441 |
attgttaatgcatgttctcgtcattggatttttaattaaacata-atctatacttcaatcttaaatccaaagacatcttttatttttgtagatgtttcat |
26968539 |
T |
|
| Q |
214 |
acagtccatataaaaaacactagatacatatatgaagagaaaagtaaaccaaatagtattgtttccatttaaacttaacaaaacaaccaaaaggtaaaca |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
26968540 |
acaatccatataaaaaacactagatacatatatgaagagaaaagtaaaccaaatagtattgtttccatataaacttaacaaagcaaccaaaaggtaaaca |
26968639 |
T |
|
| Q |
314 |
aacaagtttcatgattcatcacatcatgaatataact---------acaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatca |
404 |
Q |
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| T |
26968640 |
aacaagtttcatgattcatcacatcatgaatataacttgatgtactacaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatca |
26968739 |
T |
|
| Q |
405 |
tccaaaggtcccacatcattgaatgtctgaccggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatca |
504 |
Q |
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| T |
26968740 |
tccaaaggtcccacatcattgaatgtctgaccggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatca |
26968839 |
T |
|
| Q |
505 |
ccccctcacttccacgcctccaagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaa |
604 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26968840 |
ccccctcatttccacgcctccaagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaa |
26968939 |
T |
|
| Q |
605 |
catttcctgcattatccatgccaaaattccacaaccactgatcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttacctt |
704 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26968940 |
catttcctgcattatccatgcaaaaattccacaaccactaatcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttacctt |
26969039 |
T |
|
| Q |
705 |
ggtcttgtcttttgcctctactgtcttttgcttagcagcctcagtggtttctgcagttttctgtttagcagcttccgctgtctctgcagttttct |
799 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| || | || |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26969040 |
ggtcttgtcttttgcctctactgtcttttgtttagcagcttctgctgtctctgcagttttctgtttagcagcttctgctgtctctgcagttttct |
26969134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 754 - 854
Target Start/End: Original strand, 26969122 - 26969222
Alignment:
| Q |
754 |
tctgcagttttctgtttagcagcttccgctgtctctgcagttttctccttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat |
853 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969122 |
tctgcagttttctgtttagcagcttctgctgtctctgcagttttctgtttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat |
26969221 |
T |
|
| Q |
854 |
c |
854 |
Q |
| |
|
| |
|
|
| T |
26969222 |
c |
26969222 |
T |
|
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