View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802-Insertion-6 (Length: 776)

Name: NF0802-Insertion-6
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802-Insertion-6
NF0802-Insertion-6
[»] chr3 (16 HSPs)
chr3 (392-776)||(45909980-45910347)
chr3 (86-297)||(45914121-45914332)
chr3 (8-133)||(45870450-45870575)
chr3 (261-383)||(20981628-20981750)
chr3 (656-768)||(20993581-20993693)
chr3 (8-383)||(20994787-20995154)
chr3 (340-384)||(45910829-45910873)
chr3 (633-708)||(45880802-45880877)
chr3 (330-382)||(45870264-45870316)
chr3 (633-708)||(45855761-45855836)
chr3 (49-94)||(20948718-20948763)
chr3 (656-769)||(20980437-20980550)
chr3 (8-117)||(20981886-20981995)
chr3 (417-526)||(45869858-45869967)
chr3 (630-669)||(2995315-2995354)
chr3 (245-307)||(7058607-7058669)
[»] chr5 (7 HSPs)
chr5 (571-727)||(7975730-7975886)
chr5 (235-305)||(7976609-7976679)
chr5 (634-692)||(38141044-38141102)
chr5 (235-292)||(7895207-7895264)
chr5 (640-692)||(7895931-7895983)
chr5 (345-381)||(7976533-7976569)
chr5 (345-378)||(7895317-7895350)
[»] chr4 (4 HSPs)
chr4 (394-692)||(3979299-3979597)
chr4 (6-384)||(3978093-3978463)
chr4 (640-727)||(36590331-36590418)
chr4 (640-710)||(20272898-20272970)
[»] chr7 (2 HSPs)
chr7 (642-767)||(44500145-44500270)
chr7 (6-111)||(44501431-44501536)
[»] chr6 (6 HSPs)
chr6 (13-65)||(7140762-7140814)
chr6 (13-65)||(8680376-8680428)
chr6 (13-92)||(7115545-7115624)
chr6 (13-92)||(7120617-7120696)
chr6 (13-92)||(7124021-7124100)
chr6 (13-65)||(8656677-8656729)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 392 - 776
Target Start/End: Complemental strand, 45910347 - 45909980
Alignment:
Q  392 atttttattgaaaattaattgactagcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatct 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45910347 atttttattgaaaattaattgactagcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatct 45910248  T
Q  492 actttccttgggtaacttgaagtcattgaaagtggtaatggaaccacttctgtataaaattcgcatggcactgtgtgaagtcaagttacagaaacttaag 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  45910247 actttccttgggtaacttgaagtcattgaaagtggtaatggaaccacttctgtataaaattcgcatggcactgtgtgaattcaagttacagaaagttaag 45910148  T
Q  592 ttaaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaatt 691  Q
    | ||||                 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  45910147 tcaaag-----------------acgaaaagattttgtagaaggattggaaccatcttcactcatacctgatggaatattggacttcttgcttcgaaatt 45910065  T
Q  692 cgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttataattggtttgtttttcgtttcc 776  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45910064 cgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttataattggtttgtttttcgtttcc 45909980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 86 - 297
Target Start/End: Complemental strand, 45914332 - 45914121
Alignment:
Q  86 tctggaaacatattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaatttatctcttcgt 185  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45914332 tctggaaacgtattccttctcttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaatttatctcttcgt 45914233  T
Q  186 gattcctctatatcgctgcacgctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacaca 285  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45914232 gattcctctatatcgctgcaggctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacaca 45914133  T
Q  286 atgtccagcggt 297  Q
    ||||||||||||    
T  45914132 atgtccagcggt 45914121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 45870575 - 45870450
Alignment:
Q  8 ttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctct 107  Q
    |||||||||| ||||| || |||| |||| |||||  |||||||||||||||  |||||||  ||||||||| |||||| ||||||| | ||||||||||    
T  45870575 ttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatctttggaaacgtcttccttctct 45870476  T
Q  108 tatatttcatgctgatgattttcgaa 133  Q
    |||||| ||| ||||||| |||||||    
T  45870475 tatattgcattctgatgactttcgaa 45870450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 20981750 - 20981628
Alignment:
Q  261 attgtgaattatgctctttcacacaatgtccagcggttaggacttgaggtcaatggtgacatcgggaacattccgcttagcgtattttcatgtcagactt 360  Q
    ||||||||||| ||| |||||||||||||||||||||||  ||||   |||||| ||||||| | | | ||||| | |||| ||||||||| |||| |||    
T  20981750 attgtgaattacgctatttcacacaatgtccagcggttacaactttgtgtcaattgtgacattgcgcaaattcctcatagcctattttcatttcagcctt 20981651  T
Q  361 taacacatcttaagctttctatt 383  Q
    ||||||||||| |||||||||||    
T  20981650 taacacatcttgagctttctatt 20981628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 656 - 768
Target Start/End: Complemental strand, 20993693 - 20993581
Alignment:
Q  656 tacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttata 755  Q
    |||||||||| |||  ||||||||||| |||||||||||| || ||||||||||| |||||||||||| |||   || || ||| | ||||| |||||||    
T  20993693 tacctgatgggatagtggacttcttgcgtcaaaattcgccctcggcagaagttgacttcgtagattgcacaagaaaacctgttagaccaagacatttata 20993594  T
Q  756 attggtttgtttt 768  Q
    |||||||||||||    
T  20993593 attggtttgtttt 20993581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 383
Target Start/End: Complemental strand, 20995154 - 20994787
Alignment:
Q  8 ttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctct 107  Q
    |||||||||| || ||||| ||| |||| ||||||  ||| |||||||||||| |||||||| ||| |||||||||||| ||||||| | ||||| ||||    
T  20995154 ttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctct 20995055  T
Q  108 tatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaaattt-atctcttcgtgattcctctatatcgctgcac 206  Q
    || ||| |||  |   || ||||| |      ||| ||| |||||||  | ||| || ||||| |||| ||||||||||||||||||||| || || ||     
T  20995054 tacattgcataatagagactttcgta------ctttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcag 20994961  T
Q  207 gctcttgattttaagcctaaaaacggttgcttaaagcctca-cataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggactt 305  Q
     ||||||||||| ||| | | || ||  ||||  ||||||| | |||   | ||| |||||||||| ||| |||||||||||||||||| ||||  ||||    
T  20994960 tctcttgattttcagcgtcataatggccgctttgagcctcaacttaa---aaaga-ttgtgaattacgctatttcacacaatgtccagcagttacaactt 20994865  T
Q  306 gaggtcaatggtgacatcgggaacattccgcttagcgtattttcatgtcagactttaacacatcttaagctttctatt 383  Q
       |||| | ||||||| | | | ||||| | |||| ||||||||| |||| |||||||||||||| |||||||||||    
T  20994864 tgtgtcacttgtgacattgcgcaaattcctcatagcttattttcatttcagcctttaacacatcttgagctttctatt 20994787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 45910873 - 45910829
Alignment:
Q  340 gcgtattttcatgtcagactttaacacatcttaagctttctattt 384  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  45910873 gcgtgttttcatgtcagactttaacacatcttaagctttctattt 45910829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 708
Target Start/End: Complemental strand, 45880877 - 45880802
Alignment:
Q  633 aggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagtt 708  Q
    |||||| ||||||||| ||| ||||||||||||||||    ||||||||||||||||||||||||| ||| |||||    
T  45880877 aggattggaaccatctgcacccatacctgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt 45880802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 45870316 - 45870264
Alignment:
Q  330 attccgcttagcgtattttcatgtcagactttaacacatcttaagctttctat 382  Q
    ||||||| |||| | ||||||||||||||| ||||||||||||||||||||||    
T  45870316 attccgcctagcatgttttcatgtcagactctaacacatcttaagctttctat 45870264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 708
Target Start/End: Complemental strand, 45855836 - 45855761
Alignment:
Q  633 aggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagtt 708  Q
    |||||| ||||||||| ||| |||||| |||||||||    ||||||||||||||||||||||||| ||| |||||    
T  45855836 aggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt 45855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 20948718 - 20948763
Alignment:
Q  49 gttcaaacttgtattttatcctcaagatataaggatctctggaaac 94  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||    
T  20948718 gttcaaacttgtgttttatccacaagatataacgatctctggaaac 20948763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 769
Target Start/End: Complemental strand, 20980550 - 20980437
Alignment:
Q  656 tacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttata 755  Q
    |||||||||| |||  ||||||||||| ||||||||||||  ||||| ||||||| ||| |||||||| |||   || || ||| | ||| | |||||||    
T  20980550 tacctgatgggatagtggacttcttgcgtcaaaattcgcccacagcaaaagttgacttcatagattgcacaaaaaaatctgttagaccaaaacatttata 20980451  T
Q  756 attggtttgttttt 769  Q
    |||||||| |||||    
T  20980450 attggtttattttt 20980437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 20981995 - 20981886
Alignment:
Q  8 ttatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttctct 107  Q
    |||||||||| || ||||| ||| |||| ||||||   || |||||||||||| |||||||| ||| |||||| ||||| ||||||| | ||||| ||||    
T  20981995 ttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctct 20981896  T
Q  108 tatatttcat 117  Q
    || ||| |||    
T  20981895 tacattgcat 20981886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 526
Target Start/End: Complemental strand, 45869967 - 45869858
Alignment:
Q  417 gcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatctactttccttgggtaacttgaagtca 516  Q
    |||||||||||||||  ||||| || || |||| |||| ||| |||||   ||||  |||||| ||   |||||| | ||||||||||||||||||||||    
T  45869967 gcattagactaatccgcttgcatccctcgttgcttaggctctctccttcattcctgatctgttcaagattaatctcccttccttgggtaacttgaagtca 45869868  T
Q  517 ttgaaagtgg 526  Q
    ||||||||||    
T  45869867 ttgaaagtgg 45869858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 669
Target Start/End: Complemental strand, 2995354 - 2995315
Alignment:
Q  630 agaaggatttgaaccatcttcactcatacctgatggaata 669  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  2995354 agaaggattggaaccattttcactcatacctgatggaata 2995315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 7058669 - 7058607
Alignment:
Q  245 tcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggacttga 307  Q
    ||||||| |||| |||||| |||| |||||| ||||||| ||||||||||| |||||| ||||    
T  7058669 tcacatactcgaaagaattttgaaatatgctttttcacataatgtccagcgattaggagttga 7058607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 571 - 727
Target Start/End: Complemental strand, 7975886 - 7975730
Alignment:
Q  571 gtcaagttacagaaacttaagttaaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatat 670  Q
    |||| |||||||||| | |||| ||||| | |||||||||||||||||||||  |||  ||| |||||  |||||||||||||||||||||||||||||     
T  7975886 gtcatgttacagaaaatcaagtcaaagaaagaagctgctaagttacgaaaagcatttagagatggattgaaaccatcttcactcatacctgatggaatag 7975787  T
Q  671 aggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaa 727  Q
     ||||||||||||||||||||| || || ||| ||||||| | | |||||| |||||    
T  7975786 tggacttcttgcttcaaaattcaccttcggcaaaagttgactacatagatttctcaa 7975730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 7976679 - 7976609
Alignment:
Q  235 gcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggactt 305  Q
    ||||| |||||||| || || | || ||||||||||||||| |||||||||||||||||||||||||||||    
T  7976679 gcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactt 7976609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 692
Target Start/End: Complemental strand, 38141102 - 38141044
Alignment:
Q  634 ggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 692  Q
    ||||| ||||||||| ||| ||||||||||||||||  |||||||||| ||||||||||    
T  38141102 ggattggaaccatctgcacccatacctgatggaatagtggacttcttgattcaaaattc 38141044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 7895207 - 7895264
Alignment:
Q  235 gcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtcca 292  Q
    ||||| |||||||| || || | |||||||||||||||||| ||||||||||||||||    
T  7895207 gcttagagcctcacttactcaaaagaattgtgaattatgctatttcacacaatgtcca 7895264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 692
Target Start/End: Original strand, 7895931 - 7895983
Alignment:
Q  640 gaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 692  Q
    ||||||||| ||| ||||||||||||||||  ||| |||||||||||||||||    
T  7895931 gaaccatctgcacccatacctgatggaatagtggatttcttgcttcaaaattc 7895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 7976569 - 7976533
Alignment:
Q  345 ttttcatgtcagactttaacacatcttaagctttcta 381  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7976569 ttttcatgtcatactttaacacatcttaagctttcta 7976533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 7895317 - 7895350
Alignment:
Q  345 ttttcatgtcagactttaacacatcttaagcttt 378  Q
    |||||||||||| |||||||||||||||||||||    
T  7895317 ttttcatgtcagtctttaacacatcttaagcttt 7895350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 394 - 692
Target Start/End: Original strand, 3979299 - 3979597
Alignment:
Q  394 ttttattgaaaattaattgactagcattagactaatccatttgcacccttcattgcctaggttctttccttatctcctagtctgttgaactataatctac 493  Q
    ||||||| ||||||||||  || ||||||||||||| || ||||| ||  ||||||||||||||| ||||||| ||||  | | |||||   ||   |||    
T  3979299 ttttattaaaaattaattttcttgcattagactaattcacttgcatcccccattgcctaggttctctccttatatcctgatgttttgaagattagattac 3979398  T
Q  494 tttccttgggtaacttgaagtcattgaaagtggtaatggaaccacttctgtataaaattcgcatggcactgtgtgaagtcaagttacagaaacttaagtt 593  Q
     |||||||  ||||||||||||||||||||||  |||||||  |||| |||||  | |||||||| ||||  | ||  |||||||||||||    || |     
T  3979399 cttccttgcataacttgaagtcattgaaagtgagaatggaagaacttttgtatggatttcgcatgacactaagggatatcaagttacagaacgccaaatc 3979498  T
Q  594 aaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 692  Q
    ||||| | ||||||||| | |||||||||  |||  |||||| || |||||| |||||| | ||||||||||||||  ||||||||||  |||||||||    
T  3979499 aaagagagaagctgctaggatacgaaaagcatttaaagaagggttggaaccaccttcacccgtacctgatggaatagtggacttcttgtgtcaaaattc 3979597  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 6 - 384
Target Start/End: Original strand, 3978093 - 3978463
Alignment:
Q  6 cattatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttct 105  Q
    |||||| ||||| |||||||| ||||| || |||||   ||| |||||||||||  |||||||| |||||||||||||||| ||||||| | ||||| ||    
T  3978093 cattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagatataaggatctttggaaacgtcttcctact 3978192  T
Q  106 cttatatttcatgctgatgattttcgaattcgaacttacaacatattcataaaatttgtctctaaa-atttatctcttcgtgattcctctatatcgctgc 204  Q
    |||| ||| ||| ||   || |      || || ||||||| | |||||  | ||| || ||||||  ||||| |||||| |||||||||||  | || |    
T  3978193 cttacattgcattcttcagact------ttggagcttacaagaaattcaccagattagtgtctaaagttttatttcttcgcgattcctctatcgcactac 3978286  T
Q  205 acgctcttgattttaagcctaaaaacggttgcttaaagcctcacataatcgacagaattgtgaattatgctctttcacacaatgtccagcggttaggact 304  Q
    | |||||||||||||||| ||  |||||| ||||  |||||   | | |||| |  |||||||||||||||||||||||||||||| | || ||||||||    
T  3978287 aagctcttgattttaagcgtagtaacggtcgctttgagcct---aaactcgaaaagattgtgaattatgctctttcacacaatgtcaaacgattaggact 3978383  T
Q  305 tgaggtcaatggtgacatcgggaacattccgcttagcgtattttcatgtcagactttaacacatcttaagctttctattt 384  Q
      |  ||||||||||||| |   | ||||||   |  || |||||||||||| ||||||| |||||||||||||||||||    
T  3978384 acatttcaatggtgacattgctcaaattccgtcaactgtgttttcatgtcaggctttaacgcatcttaagctttctattt 3978463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 727
Target Start/End: Complemental strand, 36590418 - 36590331
Alignment:
Q  640 gaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaa 727  Q
    ||||||||||||| ||||||||||||||||  |||||| ||| ||||||| || || ||||||||||||||  || ||||| ||||||    
T  36590418 gaaccatcttcacccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaa 36590331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 710
Target Start/End: Complemental strand, 20272970 - 20272898
Alignment:
Q  640 gaaccatcttcactcatacctgatggaatata--ggacttcttgcttcaaaattcgccatcagcagaagttga 710  Q
    |||||||||||| |||||||  |||||||||   |||||| ||||||||||||||||||||  ||||||||||    
T  20272970 gaaccatcttcagtcataccaaatggaatattatggactttttgcttcaaaattcgccatcgacagaagttga 20272898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 767
Target Start/End: Complemental strand, 44500270 - 44500145
Alignment:
Q  642 accatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaa 741  Q
    |||||||||||   |||||||| |||||  ||||||||||||||||||||| ||||  ||||||||||| ||| | ||| |||||| || | ||||| ||    
T  44500270 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctttaa 44500171  T
Q  742 gcaagagatttataattggtttgttt 767  Q
    |  ||| ||||||||| |||||||||    
T  44500170 gagagatatttataatcggtttgttt 44500145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 44501536 - 44501431
Alignment:
Q  6 cattatccttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaaacatattccttct 105  Q
    |||||||||||| ||||| |||||||||||| |||||  ||| ||||| ||||| ||||| ||| | ||||  |||||||| ||||||| | ||||| |     
T  44501536 cattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgca 44501437  T
Q  106 cttata 111  Q
    ||||||    
T  44501436 cttata 44501431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 7140814 - 7140762
Alignment:
Q  13 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 65  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtatttt 7140762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8680428 - 8680376
Alignment:
Q  13 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 65  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtatttt 8680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 7115624 - 7115545
Alignment:
Q  13 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 92  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7115545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 7120696 - 7120617
Alignment:
Q  13 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 92  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7120617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 7124100 - 7124021
Alignment:
Q  13 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtattttatcctcaagatataaggatctctggaa 92  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| |||  |||||  ||| ||||||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7124021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8656729 - 8656677
Alignment:
Q  13 cttcagatactctcttttttgaataccaaattcgcagttcaaacttgtatttt 65  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  8656729 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 8656677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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