View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802-Insertion-7 (Length: 750)
Name: NF0802-Insertion-7
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 313 - 743
Target Start/End: Complemental strand, 8807223 - 8806791
Alignment:
| Q |
313 |
gggaagattgcatttagttggtaatgcnnnnnnngtagtgcattgaaattggtgatgttgttgatataatcttggttaaatacacgtgattaccttaaaa |
412 |
Q |
| |
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| T |
8807223 |
gggaagattgcatttagttggtgatgttttttttgtagtgcactgaaattggtgatgttgttgatataaccttgattaaatacacgtgattacgttaaaa |
8807124 |
T |
|
| Q |
413 |
agatgtgtctagtatctgatacatgttacggtataataccaaatgattacatttaaataatttatttttcaaatttattatcaatatcaacgtgttagtt |
512 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8807123 |
agacgtgtctagtatctgatatatgttacggtataataccaaatgattacatttaaataatttattttccaaatttattatcaatatcaacgtgttagtt |
8807024 |
T |
|
| Q |
513 |
ttcggtgttgtgtttggtatatgtgtctgggtcatagacatagttttaggtttgaggttttagtacaaggttgttttgagatcatgtcccttaatatggt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8807023 |
ttcggtgttgtgtttggtatatgtgtctgggtcatagacatagttttaggtttgaggttttagtacaaggttgttttgagatcatgtcccttaatatggt |
8806924 |
T |
|
| Q |
613 |
tacgtagggttgagttaataccttgactttcagattggtagttggtggtacttcttactcctaagagggtaggtgaaacttgaaagagag--agaggaac |
710 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
8806923 |
tacgtagggttgagttaataccttgactttcagattggtagttggtggtacttcttactcccaagagggtaggtgacacttgaaagagagagagaggaac |
8806824 |
T |
|
| Q |
711 |
tgttctagtttctagctatttaatgataggtag |
743 |
Q |
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| T |
8806823 |
tgttctagtttctagctatttaatgataggtag |
8806791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 348 - 749
Target Start/End: Original strand, 7085231 - 7085639
Alignment:
| Q |
348 |
tagtgcattgaaattggtgatgttgttgatataatcttggttaaatacacgtgattaccttaaaaagatgtgtctagtatctgatacatgttacggtata |
447 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
7085231 |
tagtgcattgaaattggtgatgttgttgatataaccttgattacatacacgtaattacgcaaaaaagatatgtctagtatctgatacatgttacggtata |
7085330 |
T |
|
| Q |
448 |
ataccaaatg-------attacatttaaataatttatttttcaaatttattatcaatatcaacgtgttagttttcggtgttgtgtttggtatatgtgtct |
540 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
7085331 |
atatcaaatatcaaataattacatttaaataatttatttttcaaatttattgtcaatatcaacgtgttagtttttgatgtcgtgtttggtatatgtgtct |
7085430 |
T |
|
| Q |
541 |
gggtcatagacatagttttaggtttgaggttttagtacaaggttgttttgagatcatgtcccttaatatggttacgtagggttgagttaataccttgact |
640 |
Q |
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| T |
7085431 |
gtgtcatagacatagttttaggtttgaggttttagtagaaggttgttttgagatcatgtcccttaatatggttacgtagggttgagttaatacattgact |
7085530 |
T |
|
| Q |
641 |
ttcagattggtagttggtggtacttcttactcctaagagggtaggtgaaacttgaaagagagagaggaactgttctagtttctagctatttaatgatagg |
740 |
Q |
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| T |
7085531 |
ttcagattggtagttggtggtacttcttactcctaagagggtaggtgaaacttgaaagagagagaggaactgttctagtttctagctatttaatgatagg |
7085630 |
T |
|
| Q |
741 |
tagcactgt |
749 |
Q |
| |
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||| ||||| |
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| T |
7085631 |
tagtactgt |
7085639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 7084885 - 7085122
Alignment:
| Q |
7 |
aaaagaaaggtgaaggtataaaaaatttatcaaggatgaagaggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaagt |
106 |
Q |
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| T |
7084885 |
aaaagaaaggtgaaggtataaaaaatttatcaaggatgaagaggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaagt |
7084984 |
T |
|
| Q |
107 |
tcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttatgtctttgc-------ttttgtt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
7084985 |
tcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttgtgtctttgctttttgtttttgtt |
7085084 |
T |
|
| Q |
200 |
gatggaataatgaaattgatgaaataaatgaaacccta |
237 |
Q |
| |
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| T |
7085085 |
gatggaataatgaaattgatgaaataaatcaaacccta |
7085122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 8807535 - 8807298
Alignment:
| Q |
7 |
aaaagaaaggtgaaggtataaaaaatttatcaaggatgaagaggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaagt |
106 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8807535 |
aaaagaaaggtgaaggtataaaaattttatcaaggatgaagaggttaccaggtgttgattatgaattgcagaagaaattggatgcaaaaatggatgaagt |
8807436 |
T |
|
| Q |
107 |
tcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttatgtctttgct-------tttgtt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8807435 |
tcctgctagaagacaagctcgtgaggcttttaaggatattcagcttggtattgaccatatattatttaaggtatttatgtctttgcttttggtttttgtt |
8807336 |
T |
|
| Q |
200 |
gatggaataatgaaattgatgaaataaatgaaacccta |
237 |
Q |
| |
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| T |
8807335 |
gatggaataatgaaattgatgaaataaatgaaacccta |
8807298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 1400756 - 1400887
Alignment:
| Q |
48 |
aggttaccaggtgttgataatgaattgcagaagaaattggatgcaaaaatggatgaagttcctgctagaagacaagctcgtgaggcttttaaggatattc |
147 |
Q |
| |
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||||| ||||| ||||| ||||||||||| |||| |||||||| || |||||| | ||| |||||||||||||||||||||| || ||||||||| ||| |
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|
| T |
1400756 |
aggtttccaggagttgacaatgaattgcaaaagattttggatgctaatatggatcatgtttctgctagaagacaagctcgtgaagcctttaaggatgttc |
1400855 |
T |
|
| Q |
148 |
agcttggtattgaccatatattatttaaggta |
179 |
Q |
| |
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||||||| ||||| || ||| | ||||||||| |
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|
| T |
1400856 |
agcttggaattgatcacatactctttaaggta |
1400887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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