View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802-Insertion-8 (Length: 649)
Name: NF0802-Insertion-8
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802-Insertion-8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 649
Target Start/End: Original strand, 29062754 - 29063395
Alignment:
| Q |
8 |
caataggcatctccacatttctaagtccaacaaacacaaatagagaaaaaccatcatcacaaatgaaaattgaaatggccactaaacaagtcactttggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062754 |
caataggcatctccacatttctaagtccaacaaacacaaatagagaaaaaccatcatcacaaatgaaaattgaaatggccactaaacaagtcactttggt |
29062853 |
T |
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| Q |
108 |
tcatgtagatgaagactacattgacatggaactatgttctccctcacacttcttctcttattcttttggttctccaccaaagaataccagagagtttgaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062854 |
tcatgtagatgaagactacattgacatggaactatgttctccctcacacttcttctcttattcttttggttctccaccaaagaataccagagagtttgaa |
29062953 |
T |
|
| Q |
208 |
ttccaaatgagtagttctatctcaaatgnnnnnnnttccaaaactacccctgctgatgatctcttctacaaaggaaaactcctccctcttcacctccctc |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062954 |
ttccaaatgagtagttctatctcaaatgaaaaaaattccaaaactacccctgctgatgatctcttctacaaaggaaaactcctccctcttcacctccctc |
29063053 |
T |
|
| Q |
308 |
gtcgtcttcaaatggttcaaaagcttatagaaaacacaaatttagaagataacacttttcctttcacacctcccacttttgctagttacacccctcttga |
407 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29063054 |
gtcgtcttcaaatggttcaaaagcttctagaaaacacaaatttagaagataacacttttcctttcacacctcccacttttgctagttacaccactcttga |
29063153 |
T |
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| Q |
408 |
aacctgcaatatttcaggttcagaatcatgcagagttagcagtgatgtgagtccagatgagtactcatttgaaatgaatggttttgttgtaagggattta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063154 |
aacctgcaatatttcaggttcagaatcatgcagagttagcagtgatgtgagtccagatgagtactcatttgaaatgaatggttttgttgtaagggattta |
29063253 |
T |
|
| Q |
508 |
ccaaagaataaatcttggcctaagaaactgaaaatgatgaatcagttattgtttggtcagaaactcaaagcttcaaaagcttatcttaaatctttgttca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063254 |
ccaaagaataaatcttggcctaagaaactgaaaatgatgaatcagttattgtttggtcagaaactcaaagcttcaaaagcttatcttaaatctttgttca |
29063353 |
T |
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| Q |
608 |
acaaaactagttgttcagagaaagcatgtgctagtgatccta |
649 |
Q |
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| T |
29063354 |
acaaaactagttgttcagagaaagcatgtgctagtgatccta |
29063395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 52287784 - 52287741
Alignment:
| Q |
259 |
gctgatgatctcttctacaaaggaaaactcctccctcttcacct |
302 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
52287784 |
gctgatgagcttttctacaaaggaaaactcctcccccttcacct |
52287741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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