View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802-Insertion-9 (Length: 498)

Name: NF0802-Insertion-9
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802-Insertion-9
NF0802-Insertion-9
[»] chr5 (21 HSPs)
chr5 (44-213)||(36928006-36928160)
chr5 (320-498)||(36928216-36928374)
chr5 (14-123)||(36927734-36927843)
chr5 (338-406)||(10859890-10859958)
chr5 (11-123)||(36927893-36928004)
chr5 (245-292)||(36928167-36928214)
chr5 (196-276)||(18977283-18977362)
chr5 (183-274)||(27374186-27374276)
chr5 (86-123)||(10859895-10859932)
chr5 (316-405)||(42439374-42439462)
chr5 (363-398)||(12433013-12433048)
chr5 (374-429)||(18977379-18977433)
chr5 (223-277)||(7328521-7328575)
chr5 (368-406)||(7667605-7667643)
chr5 (368-406)||(33608499-33608537)
chr5 (11-69)||(33608501-33608559)
chr5 (11-61)||(42724404-42724454)
chr5 (90-123)||(7667605-7667638)
chr5 (315-355)||(7637502-7637542)
chr5 (234-274)||(10373036-10373076)
chr5 (41-69)||(18637311-18637339)
[»] chr1 (15 HSPs)
chr1 (171-278)||(43541581-43541688)
chr1 (13-69)||(33693020-33693076)
chr1 (216-274)||(45557437-45557495)
chr1 (29-65)||(47892422-47892458)
chr1 (244-278)||(34571084-34571118)
chr1 (24-69)||(3515828-3515873)
chr1 (368-429)||(6744830-6744890)
chr1 (41-69)||(15084625-15084653)
chr1 (335-427)||(18325140-18325231)
chr1 (210-274)||(22548190-22548254)
chr1 (33-65)||(26373575-26373607)
chr1 (31-67)||(31362237-31362273)
chr1 (374-406)||(41516989-41517021)
chr1 (11-67)||(48549044-48549099)
chr1 (41-69)||(51500864-51500892)
[»] chr4 (16 HSPs)
chr4 (9-73)||(8330111-8330175)
chr4 (11-66)||(32818403-32818457)
chr4 (13-69)||(10185193-10185249)
chr4 (215-271)||(23104703-23104759)
chr4 (313-348)||(11271666-11271701)
chr4 (206-261)||(12926921-12926976)
chr4 (11-70)||(18597037-18597096)
chr4 (11-69)||(29728982-29729040)
chr4 (244-278)||(53158835-53158869)
chr4 (202-259)||(24364098-24364155)
chr4 (9-69)||(2206513-2206573)
chr4 (315-355)||(2635088-2635128)
chr4 (41-69)||(4243414-4243442)
chr4 (370-406)||(8330113-8330149)
chr4 (44-72)||(16644008-16644036)
chr4 (201-277)||(21592549-21592625)
[»] chr7 (4 HSPs)
chr7 (149-274)||(40491645-40491772)
chr7 (34-69)||(12306741-12306776)
chr7 (244-281)||(30416257-30416294)
chr7 (143-220)||(45557426-45557505)
[»] chr6 (9 HSPs)
chr6 (367-407)||(30926829-30926869)
chr6 (34-69)||(34027447-34027482)
chr6 (14-69)||(31305877-31305932)
chr6 (41-71)||(17225879-17225909)
chr6 (15-69)||(30926808-30926862)
chr6 (244-281)||(10054549-10054586)
chr6 (217-278)||(10054951-10055012)
chr6 (41-70)||(10874521-10874550)
chr6 (9-69)||(852528-852587)
[»] chr2 (8 HSPs)
chr2 (12-66)||(7630191-7630245)
chr2 (286-357)||(37561602-37561674)
chr2 (201-276)||(38129402-38129477)
chr2 (11-65)||(44439251-44439305)
chr2 (24-69)||(42982554-42982599)
chr2 (374-406)||(6767676-6767708)
chr2 (374-406)||(11510955-11510987)
chr2 (41-69)||(42741004-42741032)
[»] chr3 (7 HSPs)
chr3 (215-278)||(23264012-23264075)
chr3 (11-69)||(44489235-44489293)
chr3 (201-278)||(24916605-24916682)
chr3 (30-67)||(36239595-36239632)
chr3 (363-403)||(24916482-24916522)
chr3 (218-274)||(31129964-31130020)
chr3 (41-69)||(37335064-37335092)
[»] scaffold0283 (1 HSPs)
scaffold0283 (11-61)||(18378-18428)
[»] scaffold0036 (1 HSPs)
scaffold0036 (206-260)||(856-910)
[»] chr8 (2 HSPs)
chr8 (11-65)||(13384688-13384741)
chr8 (9-69)||(32056360-32056419)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 36928006 - 36928160
Alignment:
Q  44 ttttgattctagaattgatttttacatatttgattgctctgggggtagaattgattctaacttgaagctagattttggagnnnnnnnattctaaaattga 143  Q
    ||||||||||| |||||||||| ||||||||| ||||||||  | ||||||||| ||||||||||||||   ||||           |||||||||||||    
T  36928006 ttttgattctaaaattgattttgacatatttggttgctctgaag-tagaattgactctaacttgaagct---tttt-----------attctaaaattga 36928090  T
Q  144 tttttagttcaactcactttgacatgtgtatccaaacaaaaatcacttcagttttagctcacttttagtc 213  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36928091 tttttacttcaactcacttttacatgtgtatccaaacaaaaatcacttcagttttagctcacttttagtc 36928160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 320 - 498
Target Start/End: Original strand, 36928216 - 36928374
Alignment:
Q  320 attctggaagtgtgaaattgattttgacatgcttgaatgttctcctctagaatggattctaacttgaagctagaatttggagttttttgtgtctacaaat 419  Q
    ||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||| ||||||||||||||||||||||||                       
T  36928216 attctggaagtgtgaaattgattttgacatgcttgaacgtttttgtctagaatggactctaacttgaagctagaatttgga------------------- 36928296  T
Q  420 gatttttagcatactattcatcgttcaatccttttctacataaatacatccaaatgtaaaccattttacattcaactaa 498  Q
     ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36928297 -atttttagcctactattcattgttcaacccttttctacataaatatatccaaatgtaaaccattttacattcaactaa 36928374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 36927734 - 36927843
Alignment:
Q  14 tgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttacatatttgattgctctgggggtagaattgattctaacttgaagcta 113  Q
    ||||||||| |||| ||||||| ||  ||||||| |||||| |||||||||| ||||||||| |||||||  | ||| |||||||  |||||||||||||    
T  36927734 tgattctaacttgaagctagaatttagagcttttaattctaaaattgattttgacatatttggttgctcttcgagtacaattgatcataacttgaagcta 36927833  T
Q  114 gattttggag 123  Q
     | |||||||    
T  36927834 aaatttggag 36927843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 10859958 - 10859890
Alignment:
Q  338 tgattttgacatgcttgaatgttctcctctagaatggattctaacttgaagctagaatttggagttttt 406  Q
    |||||||||| || ||||||||||||   |||||| |||||||||||||||||||||||||||| ||||    
T  10859958 tgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaagctagaatttggagctttt 10859890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 36927893 - 36928004
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttacatatttgattgctctgggggtagaattgattctaacttgaag 110  Q
    |||||||| ||  |||| ||||||| ||| |||||||||||||   ||||||||| ||||||||||||||||||    ||||| |||||||||||| |||    
T  36927893 aattgattatatattgaagctagaatttggagcttttgattcttagattgattttgacatatttgattgctctgtaa-tagaactgattctaacttaaag 36927991  T
Q  111 ctagattttggag 123  Q
    || ||||||||||    
T  36927992 cttgattttggag 36928004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 36928167 - 36928214
Alignment:
Q  245 aatcaatttttgtcacagcataaccaaacacacattatgtatatgttt 292  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  36928167 aatcaattttggtcacagcataaccaaacacacactatgtatatgttt 36928214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 18977362 - 18977283
Alignment:
Q  196 tttagctcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacaca 276  Q
    ||||||||||||| ||||| ||||| |||| || |||||||||||| |||||||||||||||  |  ||||||||||||||    
T  18977362 tttagctcactttaagtcgaaatcaattttgca-aaacaattcattcgaaatcaatttttgttgccacataaccaaacaca 18977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 27374276 - 27374186
Alignment:
Q  183 aaatcacttcagttttagctcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaaca 274  Q
    ||||||||| | ||||| || ||||||||||||||||| ||||||| || ||||||| || ||||||||||||| |||  |||| |||||||    
T  27374276 aaatcactttacttttaacttacttttagtcggaatcaattttacagaatcaattca-ttcaaatcaatttttgccaccacatagccaaaca 27374186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 10859932 - 10859895
Alignment:
Q  86 gggtagaattgattctaacttgaagctagattttggag 123  Q
    |||||||||||||||||||||||||||||| |||||||    
T  10859932 gggtagaattgattctaacttgaagctagaatttggag 10859895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 405
Target Start/End: Complemental strand, 42439462 - 42439374
Alignment:
Q  316 attgattctggaagtgtgaaattgattttgacatgcttgaatgttctcctctagaatggattctaacttgaagctagaatttggagtttt 405  Q
    ||||||||||||||||| ||||||||||||||||| | || || |||||  || |||  ||||||||||||||||| | |||| ||||||    
T  42439462 attgattctggaagtgt-aaattgattttgacatgttagattgatctccagtataatcaattctaacttgaagctatagtttgtagtttt 42439374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 398
Target Start/End: Complemental strand, 12433048 - 12433013
Alignment:
Q  363 cctctagaatggattctaacttgaagctagaatttg 398  Q
    |||||||||||||||||||||||||||||| |||||    
T  12433048 cctctagaatggattctaacttgaagctaggatttg 12433013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 429
Target Start/End: Complemental strand, 18977433 - 18977379
Alignment:
Q  374 gattctaacttgaagctagaatttggagttttttgtgtctacaaatgatttttagc 429  Q
    |||||| ||||||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  18977433 gattctgacttgaagctagaatttagag-tttttgtttctacaattgatttttagc 18977379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 7328575 - 7328521
Alignment:
Q  223 tttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacacac 277  Q
    |||||| || |||||||||| |||||| |||||||||| ||| ||||||||||||    
T  7328575 tttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacacac 7328521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 7667605 - 7667643
Alignment:
Q  368 agaatggattctaacttgaagctagaatttggagttttt 406  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  7667605 agaattgattctaacttgaagctagaatttggagctttt 7667643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 33608499 - 33608537
Alignment:
Q  368 agaatggattctaacttgaagctagaatttggagttttt 406  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  33608499 agaattgattctaacttgaagctagaagttggagttttt 33608537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 33608501 - 33608559
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||||| |||| ||||||| ||| || |||| |||||||||| ||||||||||    
T  33608501 aattgattctaacttgaagctagaagttggagtttttcattctagaatggatttttaca 33608559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 42724404 - 42724454
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattga 61  Q
    |||||||||||| |||| ||||||| |||||| |||| |||||||||||||    
T  42724404 aattgattctaacttgaagctagaaattgaagttttttattctagaattga 42724454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 7667605 - 7667638
Alignment:
Q  90 agaattgattctaacttgaagctagattttggag 123  Q
    |||||||||||||||||||||||||| |||||||    
T  7667605 agaattgattctaacttgaagctagaatttggag 7667638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 7637542 - 7637502
Alignment:
Q  315 aattgattctggaagtgtgaaattgattttgacatgcttga 355  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  7637542 aattgattctggatgtgtaaaattgattttgacatgtttga 7637502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 10373036 - 10373076
Alignment:
Q  234 aattcatttgaaatcaatttttgtcacagcataaccaaaca 274  Q
    ||||||||| ||||||||||||||||||| | |||||||||    
T  10373036 aattcatttaaaatcaatttttgtcacagtagaaccaaaca 10373076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 18637311 - 18637339
Alignment:
Q  41 agcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||||||||||||||    
T  18637311 agcttttgattctagaattgatttttaca 18637339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 43541688 - 43541581
Alignment:
Q  171 gtatccaaacaaaaatcacttcagttttagctcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataacca 270  Q
    ||||||||||| ||||||||||| ||| | |||||||||  || |||  | ||||||| || |||||||||   |||||||||||||||| |||||||||    
T  43541688 gtatccaaacataaatcacttcattttcaactcacttttgatcagaacgaattttacagaatcaattcattcagaatcaatttttgtcaccgcataacca 43541589  T
Q  271 aacacaca 278  Q
    ||||||||    
T  43541588 aacacaca 43541581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 33693020 - 33693076
Alignment:
Q  13 ttgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||| |||| ||||||| ||| |||||||||||||| ||||||||||||||    
T  33693020 ttgattctaacttgaagctagaaattgtagcttttgattctataattgatttttaca 33693076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 45557437 - 45557495
Alignment:
Q  216 aatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaaca 274  Q
    ||||| |||||||||| ||||| |||  ||||||||||||| |||||||||||||||||    
T  45557437 aatcaattttacacaatcaatttattcaaaatcaatttttgccacagcataaccaaaca 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 47892458 - 47892422
Alignment:
Q  29 gctagaacttgaagcttttgattctagaattgatttt 65  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47892458 gctagaaattgaagcttttgattctagaattgatttt 47892422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 34571118 - 34571084
Alignment:
Q  244 aaatcaatttttgtcacagcataaccaaacacaca 278  Q
    ||||||||||||||||| |||||||||||||||||    
T  34571118 aaatcaatttttgtcaccgcataaccaaacacaca 34571084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 3515828 - 3515873
Alignment:
Q  24 ttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||| ||||||| ||| ||||||| |||||||||||||||||||||    
T  3515828 ttgaagctagaaattgtagcttttcattctagaattgatttttaca 3515873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 6744830 - 6744890
Alignment:
Q  368 agaatggattctaacttgaagctagaatttggagttttttgtgtctacaaatgatttttagc 429  Q
    ||||| |||| || ||||||||||||||||| || ||||||| ||||||| |||||||||||    
T  6744830 agaattgattatagcttgaagctagaatttgaag-tttttgtctctacaattgatttttagc 6744890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 15084653 - 15084625
Alignment:
Q  41 agcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||||||||||||||    
T  15084653 agcttttgattctagaattgatttttaca 15084625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 18325231 - 18325140
Alignment:
Q  335 aattgattttgacatgcttgaatgttctcctctagaatggattctaacttgaagctagaatttggagttttttgtgtctacaaatgattttta 427  Q
    |||||||||||||||| ||| || |||||   |||||| |||| |||||||||   |||||| |||| ||||||| ||||||| |||||||||    
T  18325231 aattgattttgacatgtttggattttctcgagtagaattgattttaacttgaaatcagaattaggag-tttttgtttctacaattgattttta 18325140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 22548254 - 22548190
Alignment:
Q  210 agtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaaca 274  Q
    ||||| ||||| ||||||| || ||||||| || |||||||||||| |||| ||| |||||||||    
T  22548254 agtcgaaatcaattttacaaaatcaattcacttaaaatcaatttttatcaccgcaaaaccaaaca 22548190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 26373607 - 26373575
Alignment:
Q  33 gaacttgaagcttttgattctagaattgatttt 65  Q
    ||||||| |||||||||||||||||||||||||    
T  26373607 gaacttgtagcttttgattctagaattgatttt 26373575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 31362273 - 31362237
Alignment:
Q  31 tagaacttgaagcttttgattctagaattgattttta 67  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  31362273 tagaatttgtagcttttgattctagaattgattttta 31362237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 41516989 - 41517021
Alignment:
Q  374 gattctaacttgaagctagaatttggagttttt 406  Q
    ||||||||||||||| |||||||||||||||||    
T  41516989 gattctaacttgaagttagaatttggagttttt 41517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 48549099 - 48549044
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgattttta 67  Q
    ||||||||||| || || ||||||| ||| ||||| |||||||||||||||||||||    
T  48549099 aattgattctactt-gaagctagaaattgtagcttctgattctagaattgattttta 48549044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 51500892 - 51500864
Alignment:
Q  41 agcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||||||||||||||    
T  51500892 agcttttgattctagaattgatttttaca 51500864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 8330111 - 8330175
Alignment:
Q  9 ataattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttacatatt 73  Q
    ||||| |||||||| |||| ||||||| ||| |||||||||||||| ||||||||||||||||||    
T  8330111 ataatggattctaacttgaagctagaaattggagcttttgattctataattgatttttacatatt 8330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 32818457 - 32818403
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgattttt 66  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||    
T  32818457 aattgattcta-tttgaagctagaatttgtagcttttgattctagaattgattttt 32818403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 10185193 - 10185249
Alignment:
Q  13 ttgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||| |||| | ||||| |||||||||||||||||| ||||||| ||||||    
T  10185193 ttgattctaacttgaaggtagaaattgaagcttttgattctaaaattgatctttaca 10185249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 23104703 - 23104759
Alignment:
Q  215 gaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaa 271  Q
    |||||| ||||||| || |||||||||| |||| |||||||||||| ||||||||||    
T  23104703 gaatcaattttacataatcaattcatttaaaattaatttttgtcaccgcataaccaa 23104759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 11271701 - 11271666
Alignment:
Q  313 agaattgattctggaagtgtgaaattgattttgaca 348  Q
    |||||||||||||||||||| |||||||||||||||    
T  11271701 agaattgattctggaagtgtaaaattgattttgaca 11271666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 12926976 - 12926921
Alignment:
Q  206 ttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcaca 261  Q
    ||||||||||||||| ||||| | || |||||||||  ||||||||||||||||||    
T  12926976 ttttagtcggaatcaattttataaaaccaattcattcaaaatcaatttttgtcaca 12926921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 18597037 - 18597096
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttacat 70  Q
    |||||||||||| |||| |||| || ||||| |||||||||||| |||||||||| ||||    
T  18597037 aattgattctaacttgaagctataatttgaaccttttgattctataattgattttaacat 18597096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 29728982 - 29729040
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||| ||| |||| | || || |||||||||||||||| ||||||||||||||||    
T  29728982 aattgattataacttgaagttaaaaattgaagcttttgattcaagaattgatttttaca 29729040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 53158869 - 53158835
Alignment:
Q  244 aaatcaatttttgtcacagcataaccaaacacaca 278  Q
    ||||||||||||||||||||| |||||||||||||    
T  53158869 aaatcaatttttgtcacagcagaaccaaacacaca 53158835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 24364155 - 24364098
Alignment:
Q  202 tcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtca 259  Q
    |||||||||||  |||||| ||||||| || |||||||||  ||||||||||||||||    
T  24364155 tcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtca 24364098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 2206513 - 2206573
Alignment:
Q  9 ataattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||||||| |||| |||| |  ||| |||||||||||||| ||||| ||||||||    
T  2206513 ataattgattctaacttgaagctaaacattgtagcttttgattctataattgttttttaca 2206573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 2635088 - 2635128
Alignment:
Q  315 aattgattctggaagtgtgaaattgattttgacatgcttga 355  Q
    |||||||||| ||||||| ||||||||||||||||| ||||    
T  2635088 aattgattctagaagtgtaaaattgattttgacatgtttga 2635128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 4243414 - 4243442
Alignment:
Q  41 agcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||||||||||||||    
T  4243414 agcttttgattctagaattgatttttaca 4243442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 8330113 - 8330149
Alignment:
Q  370 aatggattctaacttgaagctagaatttggagttttt 406  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  8330113 aatggattctaacttgaagctagaaattggagctttt 8330149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 16644008 - 16644036
Alignment:
Q  44 ttttgattctagaattgatttttacatat 72  Q
    |||||||||||||||||||||||||||||    
T  16644008 ttttgattctagaattgatttttacatat 16644036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 21592549 - 21592625
Alignment:
Q  201 ctcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacacac 277  Q
    |||||||||||| ||||||| | ||| | || |||||||||  ||||||| |||||| || ||| ||||||||||||    
T  21592549 ctcacttttagttggaatcaatcttataaaatcaattcattcaaaatcaaattttgttaccgcaaaaccaaacacac 21592625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 40491645 - 40491772
Alignment:
Q  149 agttcaactcactttgacatg--tgtatccaaacaaaaatcacttcagttttagctcacttttagtcggaatcacttttacacaaacaattcatttgaaa 246  Q
    |||| |||||||||| |||||  |||||||||| | ||||||||| |  || | |||||||||||||  ||||| ||||||| || ||||||| |  |||    
T  40491645 agtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaa 40491744  T
Q  247 tcaatttttgtcacagcataaccaaaca 274  Q
    |||||| ||||||| ||| |||||||||    
T  40491745 tcaattcttgtcaccgcagaaccaaaca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 12306741 - 12306776
Alignment:
Q  34 aacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||| |||||||||||||||||    
T  12306741 aacttgaagcttttgattttagaattgatttttaca 12306776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 30416257 - 30416294
Alignment:
Q  244 aaatcaatttttgtcacagcataaccaaacacacatta 281  Q
    |||||||||||||| || ||||||||||||||||||||    
T  30416257 aaatcaatttttgtaaccgcataaccaaacacacatta 30416294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 45557426 - 45557505
Alignment:
Q  143 atttttagttcaactcactttgacatg--tgtatccaaacaaaaatcacttcagttttagctcacttttagtcggaatca 220  Q
    |||| ||| |||||||||||| |||||  |||||||||||| ||||||||| |  || | ||||||||||||| ||||||    
T  45557426 atttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatca 45557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 30926869 - 30926829
Alignment:
Q  367 tagaatggattctaacttgaagctagaatttggagtttttt 407  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  30926869 tagaatggattctaacttgaagctagaaattggagtttttt 30926829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 34027482 - 34027447
Alignment:
Q  34 aacttgaagcttttgattctagaattgatttttaca 69  Q
    ||||||||||||||||||||||||||||||||||||    
T  34027482 aacttgaagcttttgattctagaattgatttttaca 34027447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 31305932 - 31305877
Alignment:
Q  14 tgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    ||||||||| |||| |||| || ||| |||||||||||||||||||||||| ||||    
T  31305932 tgattctaacttgaagctaaaaattggagcttttgattctagaattgatttataca 31305877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 17225879 - 17225909
Alignment:
Q  41 agcttttgattctagaattgatttttacata 71  Q
    |||||||||||||||||||||||||||||||    
T  17225879 agcttttgattctagaattgatttttacata 17225909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 30926862 - 30926808
Alignment:
Q  15 gattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||| |||| ||||||| ||| || |||| |||||||||||||||||||||    
T  30926862 gattctaacttgaagctagaaattggagttttttattctagaattgatttttaca 30926808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 10054586 - 10054549
Alignment:
Q  244 aaatcaatttttgtcacagcataaccaaacacacatta 281  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  10054586 aaatcaatttttgtcaccgcataaccagacacacatta 10054549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 10055012 - 10054951
Alignment:
Q  217 atcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacacaca 278  Q
    |||| ||||||| || |||||||||  ||||||| ||||||||| ||| |||||||||||||    
T  10055012 atcaattttacaaaaccaattcattcaaaatcaacttttgtcaccgcaaaaccaaacacaca 10054951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 10874521 - 10874550
Alignment:
Q  41 agcttttgattctagaattgatttttacat 70  Q
    ||||||||||||||||||||||||||||||    
T  10874521 agcttttgattctagaattgatttttacat 10874550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 852528 - 852587
Alignment:
Q  9 ataattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    ||||||||||| || |||| ||||||| ||| || || |||||||||||||||||||||||    
T  852528 ataattgattc-aacttgaagctagaaattgtaggttctgattctagaattgatttttaca 852587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 7630191 - 7630245
Alignment:
Q  12 attgattctaatttgatgctagaacttgaagcttttgattctagaattgattttt 66  Q
    |||||||||||| ||| ||||||  ||| ||||||||||||||||||||||||||    
T  7630191 attgattctaatgtgaagctagacattgtagcttttgattctagaattgattttt 7630245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 37561602 - 37561674
Alignment:
Q  286 tatgtttgatttca-ttttggaggaggtagaattgattctggaagtgtgaaattgattttgacatgcttgaat 357  Q
    |||||||| ||||| ||||||| ||||  ||||||||||| || |||| ||||||||||||||||| ||||||    
T  37561602 tatgtttggtttcaattttggatgaggcggaattgattctagaggtgtaaaattgattttgacatgtttgaat 37561674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 38129477 - 38129402
Alignment:
Q  201 ctcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacaca 276  Q
    ||||||||||||  |||||  ||||||| || |||||||||  ||||||||||||||| || || |||||||||||    
T  38129477 ctcacttttagttagaatccattttacagaatcaattcattcaaaatcaatttttgtcgcaacagaaccaaacaca 38129402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 44439251 - 44439305
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttt 65  Q
    |||||||||||| |||| |||| || ||| |||||||||||||| ||||||||||    
T  44439251 aattgattctaacttgaagctaaaatttggagcttttgattctaaaattgatttt 44439305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 42982554 - 42982599
Alignment:
Q  24 ttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||| ||||||| ||| |||||||||||| ||||||||||||||||    
T  42982554 ttgaagctagaaattgtagcttttgattccagaattgatttttaca 42982599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 6767676 - 6767708
Alignment:
Q  374 gattctaacttgaagctagaatttggagttttt 406  Q
    |||||||||||||||||||||||||||| ||||    
T  6767676 gattctaacttgaagctagaatttggagctttt 6767708  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 11510955 - 11510987
Alignment:
Q  374 gattctaacttgaagctagaatttggagttttt 406  Q
    ||||||| |||||||||||||||||||||||||    
T  11510955 gattctatcttgaagctagaatttggagttttt 11510987  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 42741004 - 42741032
Alignment:
Q  41 agcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||||||||||||||    
T  42741004 agcttttgattctagaattgatttttaca 42741032  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 23264012 - 23264075
Alignment:
Q  215 gaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacacaca 278  Q
    |||||| |||||||||| |||||||||| |||| |||||||| |||   |||||||||||||||    
T  23264012 gaatcaattttacacaatcaattcatttaaaattaatttttgccacgatataaccaaacacaca 23264075  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 44489235 - 44489293
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||||| ||||| |||||| ||| || |||| |||||| ||||||||||||||    
T  44489235 aattgattctaacttgatactagaagttggagttttttattctacaattgatttttaca 44489293  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 24916605 - 24916682
Alignment:
Q  201 ctcacttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaacacaca 278  Q
    ||||||||||| | |||||| ||||||| || ||| || ||  |||| |||||||||||| ||| |||||||||||||    
T  24916605 ctcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaacacaca 24916682  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 36239632 - 36239595
Alignment:
Q  30 ctagaacttgaagcttttgattctagaattgattttta 67  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  36239632 ctagaatttgaagctttcgattctagaattgattttta 36239595  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 24916482 - 24916522
Alignment:
Q  363 cctctagaatggattctaacttgaagctagaatttggagtt 403  Q
    ||||||||||  ||||||||||||||||||||||| |||||    
T  24916482 cctctagaatcaattctaacttgaagctagaatttcgagtt 24916522  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 31130020 - 31129964
Alignment:
Q  218 tcacttttacacaaacaattcatttgaaatcaatttttgtcacagcataaccaaaca 274  Q
    ||||||||||| || | ||||| ||||||||||||||||| || ||| |||||||||    
T  31130020 tcacttttacaaaatctattcaattgaaatcaatttttgttactgcaaaaccaaaca 31129964  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 37335092 - 37335064
Alignment:
Q  41 agcttttgattctagaattgatttttaca 69  Q
    |||||||||||||||||||||||||||||    
T  37335092 agcttttgattctagaattgatttttaca 37335064  T

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Target: scaffold0283 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 18378 - 18428
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattga 61  Q
    |||||||||||| |||| ||||||| |||||| |||| |||||||||||||    
T  18378 aattgattctaacttgaagctagaaattgaagttttttattctagaattga 18428  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 910 - 856
Alignment:
Q  206 ttttagtcggaatcacttttacacaaacaattcatttgaaatcaatttttgtcac 260  Q
    ||||||| ||||||| ||||| | || |||||||||| |||||||||||||||||    
T  910 ttttagttggaatcaattttagagaatcaattcatttaaaatcaatttttgtcac 856  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 13384741 - 13384688
Alignment:
Q  11 aattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttt 65  Q
    ||||||||||| ||||| |||| || ||| |||||||||||||||||||||||||    
T  13384741 aattgattcta-tttgaagctaaaatttgtagcttttgattctagaattgatttt 13384688  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 32056360 - 32056419
Alignment:
Q  9 ataattgattctaatttgatgctagaacttgaagcttttgattctagaattgatttttaca 69  Q
    |||||||||||||| || | ||||||| ||| ||||| | |||||||||||||||||||||    
T  32056360 ataattgattctaactttaagctagaaattggagcttct-attctagaattgatttttaca 32056419  T

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