View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0802_high_11 (Length: 378)
Name: NF0802_high_11
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 82 - 349
Target Start/End: Complemental strand, 8466331 - 8466066
Alignment:
| Q |
82 |
ggcgtaaacaaacttaaatagcatgaacaatacaatttgatttcaatgctaacacttgaagatgtgtaataaatcatagtcgatttcgctaactcataag |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8466331 |
ggcgtaaacaaacttaaatagcatgaacaatacaatttgatttcaacgctaacacttgaagatgtgtaataaatcatagtcgatttcgctaactcataag |
8466232 |
T |
|
| Q |
182 |
atactacactagtttgtctcttaaaaaattcaacctacgaatttggacataaaacaaacaatctagaaatacaatttctaatgataaagttaaaataaga |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8466231 |
atactacactagtttgtctcttaaaaaattcaacctacgaatttggacataaaacaaacaatctagaaatacaatttctaataataaagttaaaataaga |
8466132 |
T |
|
| Q |
282 |
taaattggtgggagggggttaatgaaattatcaacaaccactttgacctcaagcttaaataatacatc |
349 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8466131 |
taaattggtggga--gggttaatgaaattatcaacaaccactttggcctcaagcttaaataatacatc |
8466066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 274 times since January 2019
Visitors: 5834