View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_high_21 (Length: 283)
Name: NF0802_high_21
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 29 - 271
Target Start/End: Complemental strand, 52600695 - 52600453
Alignment:
| Q |
29 |
agaaaactcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttatcattgtcaggtcaaaattgtgt |
128 |
Q |
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| T |
52600695 |
agaaaactcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttctcattgtcaggtcaaaattgtgt |
52600596 |
T |
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| Q |
129 |
atcaaagtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52600595 |
atcaaagtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggt |
52600496 |
T |
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| Q |
229 |
ggcttttctcaatgtctggaaatcaaagtagctaattgtccta |
271 |
Q |
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| T |
52600495 |
ggcttttctcaatgtctggaaatcaaagtagctaattgtccta |
52600453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 16912588 - 16912687
Alignment:
| Q |
165 |
atacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaat |
264 |
Q |
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| T |
16912588 |
ataccttatatacaggtccaaatccaccacttccaagaagatttccatgaaagaagttattggttgccttcctcaacgtctggtaatcaaagtagctaat |
16912687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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