View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_high_30 (Length: 248)
Name: NF0802_high_30
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_high_30 |
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| [»] scaffold0028 (2 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 109090 - 109257
Alignment:
| Q |
1 |
ctcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctgttaacattaagg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
109090 |
ctcaaacaatactcattagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctctaaatctgttaacattaagg |
109189 |
T |
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| Q |
101 |
aaaaactaatcttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109190 |
aaaaactaatcttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
109257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 109283 - 109340
Alignment:
| Q |
165 |
tgaagagtaagagcattgtactcgatgttgtaatgacaagtattggttggaaagaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109283 |
tgaagagtaagagcattgtactcgatgttgtaatgacaagtattggttggaaagaatt |
109340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 21757177 - 21757298
Alignment:
| Q |
1 |
ctcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctgttaacattaagg |
100 |
Q |
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|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21757177 |
ctcaaacaatcctcatcagctttttcaccgtacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctcaaaatctgttaacattaagg |
21757276 |
T |
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| Q |
101 |
aaaaactaatcttgaatccata |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
21757277 |
aaaaactaatcttgaatccata |
21757298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 13936036 - 13936121
Alignment:
| Q |
13 |
tcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctgttaacattaa |
98 |
Q |
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|||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| ||| |||| |||||||| |
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| T |
13936036 |
tcatcagctttttcaccatacgatcgcaaggaggctcagaaagaaaaaatgctggaagatatcatctcaaaacctgtcaacattaa |
13936121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 101818 - 101662
Alignment:
| Q |
12 |
ctcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtctataaatctgttaacattaaggaaaaactaatc |
111 |
Q |
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||||| ||||||||||||||| ||||||||||| ||| |||| ||||| ||| |||||||||| ||| ||| ||| |||||||| || || ||||| |
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| T |
101818 |
ctcatcagctttttcaccatatgatcgcaaggaggctcagaaagaaaagatgatggaagatattatctcaaaacttgtcaacattaaagagaagataatc |
101719 |
T |
|
| Q |
112 |
ttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
168 |
Q |
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|| |||||||| | ||||| ||||| |||||||| | |||||||||||||||||| |
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|
| T |
101718 |
ttaaatccatatcaaacaagtccagctcctgaaatctcgtcaagacctctctgtgaa |
101662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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