View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_high_8 (Length: 428)

Name: NF0802_high_8
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_high_8
NF0802_high_8
[»] chr5 (3 HSPs)
chr5 (30-413)||(5946268-5946649)
chr5 (38-74)||(5946660-5946696)
chr5 (31-68)||(22688295-22688332)
[»] chr8 (1 HSPs)
chr8 (155-192)||(9700111-9700148)
[»] chr2 (2 HSPs)
chr2 (155-192)||(15120293-15120330)
chr2 (155-192)||(2964732-2964769)
[»] chr3 (2 HSPs)
chr3 (155-189)||(39769647-39769681)
chr3 (155-192)||(40240744-40240781)
[»] chr7 (1 HSPs)
chr7 (155-192)||(23214965-23215002)
[»] chr1 (1 HSPs)
chr1 (155-192)||(33723305-33723342)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 413
Target Start/End: Complemental strand, 5946649 - 5946268
Alignment:
Q  30 ataactcctaactaatctaactaatatgtcactaacttttaaatctatagtaatttgatgttttcagcttatgaacatgtcttaagcgatttctgaccgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5946649 ataactcctaactaatctaactaatatgtcactaacttttaaatctatagtaatttgatgttttcagcttatgaacatgtcttaagctatttctgaccgt 5946550  T
Q  130 aagctctgtcaagtggtttcatacatgtttatgctagtagataagttcaaataagttaatccagtcacattcatagcaattttatcataaacgttctttt 229  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5946549 aagctctgtcaagtggttttacacatgtttatgctagtagataagttcaaataagtcaatccagtcacattcatagcaattttatcataaacgttctttt 5946450  T
Q  230 tctttacggttcataaaccttctttgttgtttgtttatcatgtttttcacttagtattttgctagacttaaatcaaactatagaggcataatttgttgtt 329  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5946449 tctttacggttcataaaccttcttt-ttgtttgtttatcatgtttttcacttagtattttgctagactt-aatcaaactatagaggcataatttgttgtt 5946352  T
Q  330 ggctacttaaactacaagtgccttagattggttttctattttacagaactgcatttgagtgactcattgatggaacccgctcct 413  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5946351 agctacttaaactacaagtgccttagattggttttctattttacagaactgcatttgagtgactcattgatggaacccgctcct 5946268  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 5946660 - 5946696
Alignment:
Q  38 taactaatctaactaatatgtcactaacttttaaatc 74  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5946660 taactaatctaactaatatgtaactaacttttaaatc 5946696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 22688295 - 22688332
Alignment:
Q  31 taactcctaactaatctaactaatatgtcactaacttt 68  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  22688295 taactcctaactaatctaactaacatgtaactaacttt 22688332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 9700111 - 9700148
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaatcca 192  Q
    |||||||||||||||||||| |||||||||||||||||    
T  9700111 tgtttatgctagtagataagctcaaataagttaatcca 9700148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 15120293 - 15120330
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaatcca 192  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  15120293 tgtttatgctagtagataagttcaaataagtcaatcca 15120330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 2964769 - 2964732
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaatcca 192  Q
    |||||||||  |||||||||||||||||||||||||||    
T  2964769 tgtttatgccggtagataagttcaaataagttaatcca 2964732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 39769647 - 39769681
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaat 189  Q
    ||||||||| |||||||||||||||||||||||||    
T  39769647 tgtttatgcgagtagataagttcaaataagttaat 39769681  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 40240781 - 40240744
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaatcca 192  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  40240781 tgtttatgctagtatataagctcaaataagttaatcca 40240744  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 23214965 - 23215002
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaatcca 192  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23214965 tgtttatgctagtagataaggtcaaataagtcaatcca 23215002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 33723342 - 33723305
Alignment:
Q  155 tgtttatgctagtagataagttcaaataagttaatcca 192  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  33723342 tgtttatggtagtagataagttcaaataagtcaatcca 33723305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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