View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_10 (Length: 574)
Name: NF0802_low_10
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 574
Target Start/End: Original strand, 34514812 - 34515382
Alignment:
| Q |
13 |
aatatgcaaaggagggaataaatccttaatttcttttgttatatatagtagtaatttaatactaataaatcaacccggatcacacgacattacccataaa |
112 |
Q |
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| T |
34514812 |
aatatgcaaaggagggaataaatccttaatttcttttgttatatatagtagtaatttaatactaataaatcaacccggatcacaagacattacccataaa |
34514911 |
T |
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| Q |
113 |
agtttaatataatacgacaacatttgctgaaaaaatacttcaagcacatggaatgtcatgtaagttcattttgtcccgtgacatgctgcagagtg----- |
207 |
Q |
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| T |
34514912 |
agtttaatttaatacgacaacatttgcggaaaaaatacttcaagcacatggaatgtcatgtaagttcattttgtcccgtgacatgctgcagagtgccgac |
34515011 |
T |
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| Q |
208 |
-----gaacacaaaataacaatttaatccactcaataatgtatttttcccataaacaaccctctaaatttcaaaccaatacctcacatgtgacaccatat |
302 |
Q |
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| T |
34515012 |
gagtggaacacaaaataacaatttaatccactcaataatgtatttttcccataaacaaccctctaaatttcaaacca-tacctcacatgtgacaccatat |
34515110 |
T |
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| Q |
303 |
atcactaatttactattcacaattgctaatccatccatgaaacccctcatactcaattaagaaaattaaataattgttctctaccaccctccatgtgaag |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34515111 |
atcactaatttactattcagaattgctaatccatccatgaaacccctcatactcaattaagaaaattaaataattgttctctaccaccctccatgtgaac |
34515210 |
T |
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| Q |
403 |
cctttatctggcactaannnnnnnnnnnnnnnnnctatcctatatatacaatgcatgatcaactagaacataacataacataacatacaaacatcaagtt |
502 |
Q |
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| T |
34515211 |
cctttatctggcactaattttgttttgattttttctatcctatatatacaatacatgatcaactagaacataacataacataacatacaaacatcaagtt |
34515310 |
T |
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| Q |
503 |
aatattctctgtcacagtttttggaccctcaaaataggacaatatgggtttcaatgtccataaattgttttt |
574 |
Q |
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| T |
34515311 |
aatattctctgtcacagtttttggaccctcaaaataggacaatatgggtttcaatgtccataaattgttttt |
34515382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 574
Target Start/End: Original strand, 34505503 - 34505584
Alignment:
| Q |
495 |
atcaagttaatattc--tctgtcacagtttttggaccctcaaaataggacaatatgggtttcaatgtccataaattgttttt |
574 |
Q |
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|||| |||||||||| ||| |||||||||||||||| || |||||||| |||||| ||| |||||||||| ||||||||| |
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| T |
34505503 |
atcaggttaatattcattctttcacagtttttggaccaccagaataggaccatatggctttgaatgtccatacattgttttt |
34505584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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