View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0802_low_11 (Length: 554)
Name: NF0802_low_11
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 146 - 421
Target Start/End: Complemental strand, 10120109 - 10119833
Alignment:
| Q |
146 |
tgatgattaattagaagttagaagcagaatcttggttgcagttgtaacattagcatgtgagtatgtgtcatgtataacgttggtttcttgtgttgtctta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10120109 |
tgatgattaattagaagttagaagcagaatcttggttgcagttgtaacattagcatgtgattatgtgtcatgtataacgttagtttcttgtgttgtctta |
10120010 |
T |
|
| Q |
246 |
attgaatgagattatttatatataataacaaaaagaatggcaaaacgtggagtagtaggagtaaaggaaagtagtagtgggaaaaagatttagatgaaaa |
345 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10120009 |
attgaatgagattatttatatataacaacaaaaagaatggcaaaacgtggagtagtgggagtaaaggaaagtagtagtgggaaaaagatttagatgaaaa |
10119910 |
T |
|
| Q |
346 |
caaagagagaaggagtgttgcttttggtacaagcaaaaggaa-cgcaaagcgccatatttctattaaaccgttatat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10119909 |
caaagagagaaggagtgttgcttttggtacaagcaaaaggaaccgcaaagcgccatatttctattaaaccgttatat |
10119833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 10120250 - 10120173
Alignment:
| Q |
5 |
gagaagcaaaggccagaatttgcaacaagtactgcaagaagcagattaaagatatggtatcttaaagaagacattgtt |
82 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10120250 |
gagaagccaaagccagaatttgcaacaagtactgcaagaagcagattaaagatatggtatcttaaagaagacattgtt |
10120173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1203 times since January 2019
Visitors: 5828