View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_low_12 (Length: 550)

Name: NF0802_low_12
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_low_12
NF0802_low_12
[»] chr7 (13 HSPs)
chr7 (247-356)||(531518-531627)
chr7 (255-356)||(632759-632860)
chr7 (370-538)||(21071319-21071486)
chr7 (370-534)||(45122623-45122782)
chr7 (159-221)||(546884-546946)
chr7 (451-538)||(22843403-22843491)
chr7 (444-538)||(7035561-7035658)
chr7 (444-538)||(42231011-42231108)
chr7 (451-538)||(5829799-5829890)
chr7 (444-512)||(12787278-12787346)
chr7 (444-538)||(9002388-9002485)
chr7 (159-198)||(631702-631741)
chr7 (370-418)||(5829927-5829975)
[»] scaffold0888 (1 HSPs)
scaffold0888 (370-538)||(992-1154)
[»] chr4 (10 HSPs)
chr4 (370-538)||(618581-618744)
chr4 (451-538)||(37532673-37532761)
chr4 (370-538)||(31920258-31920423)
chr4 (373-538)||(786710-786869)
chr4 (444-538)||(55560234-55560331)
chr4 (370-538)||(49708966-49709130)
chr4 (444-538)||(35854764-35854860)
chr4 (448-512)||(6244782-6244846)
chr4 (370-418)||(37532796-37532844)
chr4 (444-535)||(49788098-49788193)
[»] chr3 (27 HSPs)
chr3 (370-538)||(37803021-37803184)
chr3 (451-538)||(41221070-41221157)
chr3 (370-538)||(9999207-9999373)
chr3 (444-538)||(47691893-47691988)
chr3 (370-538)||(10234218-10234385)
chr3 (373-538)||(50408952-50409121)
chr3 (370-538)||(10037432-10037596)
chr3 (370-538)||(11361046-11361210)
chr3 (444-520)||(10040930-10041008)
chr3 (370-538)||(10970167-10970338)
chr3 (370-538)||(11367435-11367599)
chr3 (444-538)||(10108835-10108932)
chr3 (444-538)||(10230074-10230171)
chr3 (448-538)||(15329833-15329926)
chr3 (451-538)||(10109472-10109563)
chr3 (370-538)||(41764633-41764798)
chr3 (444-538)||(10230695-10230792)
chr3 (444-538)||(27273261-27273358)
chr3 (464-538)||(52917633-52917708)
chr3 (452-538)||(31675-31764)
chr3 (448-538)||(10233673-10233766)
chr3 (448-538)||(23092403-23092496)
chr3 (373-418)||(46912151-46912196)
chr3 (370-418)||(52916754-52916802)
chr3 (370-418)||(10040861-10040909)
chr3 (370-418)||(10109387-10109435)
chr3 (370-418)||(15329949-15329996)
[»] chr1 (17 HSPs)
chr1 (370-538)||(28960863-28961024)
chr1 (370-538)||(48240056-48240219)
chr1 (370-533)||(36206008-36206165)
chr1 (444-538)||(7101827-7101922)
chr1 (445-538)||(2454019-2454113)
chr1 (370-508)||(48776626-48776757)
chr1 (370-538)||(16043153-16043316)
chr1 (370-512)||(25075150-25075285)
chr1 (444-538)||(18147545-18147642)
chr1 (444-538)||(36518795-36518892)
chr1 (444-538)||(52499588-52499685)
chr1 (370-538)||(16040815-16040978)
chr1 (370-538)||(16748931-16749095)
chr1 (444-538)||(37391411-37391507)
chr1 (445-538)||(6312258-6312354)
chr1 (451-538)||(12450841-12450920)
chr1 (370-418)||(12450757-12450805)
[»] chr6 (11 HSPs)
chr6 (373-538)||(10186342-10186505)
chr6 (370-538)||(4221273-4221445)
chr6 (370-538)||(12518404-12518567)
chr6 (370-538)||(12516176-12516341)
chr6 (370-538)||(15330329-15330492)
chr6 (451-538)||(30880927-30881015)
chr6 (444-520)||(14906355-14906431)
chr6 (444-538)||(31512758-31512855)
chr6 (370-512)||(24195691-24195826)
chr6 (448-538)||(29642620-29642713)
chr6 (373-418)||(14906291-14906336)
[»] scaffold0012 (1 HSPs)
scaffold0012 (370-538)||(98087-98257)
[»] chr5 (23 HSPs)
chr5 (370-538)||(6088007-6088170)
chr5 (370-516)||(18115597-18115736)
chr5 (370-516)||(43525170-43525309)
chr5 (451-538)||(14194139-14194227)
chr5 (370-534)||(15033850-15034009)
chr5 (370-538)||(2262258-2262429)
chr5 (451-538)||(17872167-17872255)
chr5 (370-538)||(25544010-25544174)
chr5 (370-512)||(4050596-4050731)
chr5 (444-538)||(10023988-10024085)
chr5 (444-538)||(30347747-30347844)
chr5 (451-538)||(26831498-26831589)
chr5 (445-533)||(30313240-30313331)
chr5 (444-538)||(24631067-24631164)
chr5 (444-538)||(26792667-26792764)
chr5 (370-538)||(43448270-43448434)
chr5 (444-535)||(8429845-8429939)
chr5 (444-538)||(27879942-27880040)
chr5 (444-497)||(37371770-37371823)
chr5 (456-538)||(37260185-37260271)
chr5 (462-538)||(3688820-3688899)
chr5 (462-538)||(3877886-3877965)
chr5 (370-418)||(14194265-14194313)
[»] scaffold0022 (1 HSPs)
scaffold0022 (370-538)||(125007-125178)
[»] chr2 (17 HSPs)
chr2 (373-534)||(17687621-17687779)
chr2 (451-538)||(24244735-24244823)
chr2 (373-520)||(35608690-35608831)
chr2 (371-538)||(2881740-2881911)
chr2 (451-538)||(27508245-27508333)
chr2 (451-538)||(3641932-3642020)
chr2 (444-538)||(36047961-36048058)
chr2 (451-538)||(40488956-40489047)
chr2 (370-538)||(24270217-24270381)
chr2 (444-538)||(26955189-26955286)
chr2 (444-538)||(39441936-39442033)
chr2 (370-418)||(3641849-3641897)
chr2 (444-535)||(41921443-41921538)
chr2 (448-538)||(21394225-21394318)
chr2 (444-485)||(28667500-28667541)
chr2 (444-485)||(37826334-37826375)
chr2 (370-418)||(24244656-24244703)
[»] chr8 (12 HSPs)
chr8 (451-538)||(13424496-13424584)
chr8 (370-538)||(14713061-14713233)
chr8 (444-538)||(7780601-7780698)
chr8 (444-538)||(7820691-7820788)
chr8 (444-538)||(25219835-25219932)
chr8 (370-538)||(37915303-37915468)
chr8 (448-538)||(14764490-14764580)
chr8 (370-538)||(21114941-21115106)
chr8 (444-513)||(30306000-30306069)
chr8 (370-538)||(31979790-31979954)
chr8 (370-418)||(13424412-13424460)
chr8 (370-418)||(33863123-33863172)
[»] scaffold0025 (1 HSPs)
scaffold0025 (444-538)||(13351-13446)
[»] scaffold1370 (1 HSPs)
scaffold1370 (370-520)||(1454-1598)
[»] scaffold0262 (1 HSPs)
scaffold0262 (370-538)||(17800-17965)
[»] scaffold0532 (2 HSPs)
scaffold0532 (451-538)||(3583-3671)
scaffold0532 (369-418)||(3706-3755)
[»] scaffold0003 (2 HSPs)
scaffold0003 (370-538)||(164316-164480)
scaffold0003 (370-538)||(172431-172595)
[»] scaffold1424 (1 HSPs)
scaffold1424 (370-538)||(461-642)
[»] scaffold0107 (2 HSPs)
scaffold0107 (444-520)||(44863-44941)
scaffold0107 (372-418)||(44799-44845)
[»] scaffold0499 (1 HSPs)
scaffold0499 (444-538)||(10002-10099)
[»] scaffold0134 (2 HSPs)
scaffold0134 (451-538)||(6497-6588)
scaffold0134 (370-418)||(6623-6671)
[»] scaffold0073 (2 HSPs)
scaffold0073 (370-534)||(23383-23543)
scaffold0073 (370-538)||(18248-18412)
[»] scaffold0636 (1 HSPs)
scaffold0636 (444-538)||(28-125)
[»] scaffold0017 (2 HSPs)
scaffold0017 (451-538)||(185432-185523)
scaffold0017 (370-418)||(185349-185397)
[»] scaffold0582 (1 HSPs)
scaffold0582 (444-538)||(10276-10373)
[»] scaffold0550 (1 HSPs)
scaffold0550 (444-538)||(4795-4892)
[»] scaffold0090 (1 HSPs)
scaffold0090 (444-538)||(50206-50303)
[»] scaffold0029 (2 HSPs)
scaffold0029 (448-538)||(133133-133226)
scaffold0029 (370-418)||(133249-133297)
[»] scaffold0472 (1 HSPs)
scaffold0472 (444-538)||(13320-13417)
[»] scaffold0002 (3 HSPs)
scaffold0002 (448-538)||(310961-311054)
scaffold0002 (370-418)||(331454-331502)
scaffold0002 (370-418)||(311077-311125)
[»] scaffold0118 (1 HSPs)
scaffold0118 (448-538)||(29832-29928)
[»] scaffold0196 (1 HSPs)
scaffold0196 (370-418)||(23182-23230)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 531627 - 531518
Alignment:
Q  247 tatgatcacttgtttgtgcagtagattgaccaccttgagaagaaaaaggtggctgcatagaatggccagtagatgacgaaaacccaggcatgacaggttg 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  531627 tatgatcacttgtttgtgcagtagattgaccaccttgagaagaaaaaggtggctgcatagaatggccagtagatgacgaaaacccaggcatgacaggttg 531528  T
Q  347 accagaatga 356  Q
    ||||||||||    
T  531527 accagaatga 531518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 632759 - 632860
Alignment:
Q  255 cttgtttgtgcagtagattgaccaccttgagaagaaaaaggtggctgcatagaatggccagtagatgacgaaaacccaggcatgacaggttgaccagaat 354  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  632759 cttgtttgtgcagtagattgaccgccttgagaagcaaaaggtggctgcatagaatgtccagtagatgacgaaaacccaggcatgccaggttgaccagaat 632858  T
Q  355 ga 356  Q
    ||    
T  632859 ga 632860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 21071486 - 21071319
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnn-tatcatcttaattttgtatatattt 468  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||      ||||||||||||        |||||||||||||||||||||||||    
T  21071486 tagattttatattatgttatcttaaagttataagtgttgttataattta------aatttgatatggaaaaaaaatatcatcttaattttgtatatattt 21071393  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggat---ttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||  ||| || |||||||||||||||||   ||||||||| ||||||||||||||||||    
T  21071392 tgaaatatctaaacattgtacacaacgattaaagtatttggatttattatacttatactaattatttgtagtat 21071319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 534
Target Start/End: Complemental strand, 45122782 - 45122623
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||      |||| ||||||        ||||||||||||||||||||||||||    
T  45122782 tagattttatattatattatcttaaagttataattgtggttataattta------aattcgatatg--aaaaaatatcatcttaattttgtatatatttt 45122691  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgta 534  Q
    |||||||||||||||| || |||| ||| |||||||||| ||  ||||||||  ||||||||||||||    
T  45122690 gaaatatctaaacattgcatataacgataaaagtatttgaattattatacttgtactaattatttgta 45122623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 546884 - 546946
Alignment:
Q  159 ataatgttcaattcaaactcatcggtatccaccatatggccgtatgagaataatgttcaattc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  546884 ataatgttcaattcaaactcatcggtatccaccatatggccgtatgagaataatgttcaattc 546946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 22843403 - 22843491
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||  ||||||||||||||| ||||||| || ||||||||||||||||||| ||| ||||||||||||||||||    
T  22843403 ttaattttgtatatatttaaaaatatctaaacattgcacataacgactaaagtatttggatttatatttatactaattatttgtagtat 22843491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 7035561 - 7035658
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  7035561 tatcatcttaattttgtatatattttgaaatatctaaacatttcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 7035658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 42231011 - 42231108
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||| ||||||    
T  42231011 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttttagtat 42231108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 5829890 - 5829799
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatt---tatactta-actaattatttgtagtat 538  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||   |||||||| ||||||||||||| ||||    
T  5829890 ttaattttgtaaatattttgaaatatctaaacattgcacataacgattaaagtattttgatttactatacttatactaattatttgtcgtat 5829799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 12787346 - 12787278
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatt 512  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| ||||||||||    
T  12787346 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggatt 12787278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 9002485 - 9002388
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||| ||  ||||||||  ||||||| ||||||||||    
T  9002485 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttgaattattatacttgtactaattttttgtagtat 9002388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 631702 - 631741
Alignment:
Q  159 ataatgttcaattcaaactcatcggtatccaccatatggc 198  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  631702 ataatgttcaattcaatctcatcggtatccaccatatggc 631741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 5829975 - 5829927
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||||||||    
T  5829975 tagattttatactatgttatcttaaagttataagtgttgttataattta 5829927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 1154 - 992
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      ||||||||||||       ||||||||||||||||||||||||||    
T  1154 tagattttatattatgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaa-tatcatcttaattttgtatatatttt 1062  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  1061 gaaatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 618744 - 618581
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      ||||||||||||       ||||||||||||||||||||||||||    
T  618744 tagattttatattgtgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaaatatcatcttaattttgtatatatttt 618651  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
     ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  618650 aaaatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 618581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 37532761 - 37532673
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatacttaact-aattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  37532761 ttaattttgtatatattttgaaatatctaaacattgcacataacgattaaagtatttggatttatacttaactaaattatttgtagtat 37532673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 31920258 - 31920423
Alignment:
Q  370 tagattttatattatattatcttaaa-gttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatattt 468  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||      |||| ||||||        |||||||||||||||||||||||||    
T  31920258 tagattttatattattttatcttaaaagttataattgtggttataattta------aattcgatatg-aaaaaaatatcatcttaattttgtatatattt 31920350  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  31920351 tgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 31920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 538
Target Start/End: Original strand, 786710 - 786869
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatattttgaa 472  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||      |||| ||||||        ||||||||||| |||||||||||||||||    
T  786710 attttatattatgttatcttaaagttataattgtggttataattta------aattcgatatg-aaaaaaatatcatcttaactttgtatatattttgaa 786802  T
Q  473 atatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||   ||||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  786803 atatctaaacatt--gcataacgataaaagtatttggattattatacttgtactaattatttgtagtat 786869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 55560331 - 55560234
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  55560331 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 55560234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 49708966 - 49709130
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      |||||||||||        ||| || |||||||||||||||||||    
T  49708966 tagattttatattttgttatcttaaagttataattgtggttataattta------aatttgatatg-aaaaaaatataattttaattttgtatatatttt 49709058  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt--tatactta-actaattatttgtagtat 538  Q
     ||||||||||||||| || |||| ||| ||| ||||||||||  ||||| |  ||||||||||||||||||    
T  49709059 aaaatatctaaacattgcatataacgataaaaatatttggattattatacctgtactaattatttgtagtat 49709130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 35854764 - 35854860
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  35854764 tatcatcttaatttt-tatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 35854860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 448 - 512
Target Start/End: Original strand, 6244782 - 6244846
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatt 512  Q
    |||||||||||||||||||||||||||||||||||||| || | || ||| ||| ||||||||||    
T  6244782 atcttaattttgtatatattttgaaatatctaaacattgcatacaacgataaaaatatttggatt 6244846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 37532844 - 37532796
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  37532844 tagattttatattatgttatcttaaagttataagtatggttataattta 37532796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 535
Target Start/End: Complemental strand, 49788193 - 49788098
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgat-taaagtatttggat--ttatactt-aactaattatttgtag 535  Q
    ||||||||| |||||||||||||||| ||||||||||||||| || |||| |||  ||| |||||||||  ||||||||  |||||||||||||||    
T  49788193 tatcatcttcattttgtatatattttaaaatatctaaacattgcatataacgataaaaaatatttggattattatacttgtactaattatttgtag 49788098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 37803184 - 37803021
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      ||||||||||||       ||||||||||||||||||||||||||    
T  37803184 tagattttatattgtgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaaatatcatcttaattttgtatatatttt 37803091  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    || ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37803090 gagatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 37803021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 41221070 - 41221157
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatacttaactaattatttgtagtat 538  Q
    ||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  41221070 ttaattttgtatatattttgaaatacctaaacattgcacataaatattaaagtatttggatttatacttaactaattatttgtagtat 41221157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 9999207 - 9999373
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||||||||       |||||||||||       ||||||||||||||||||||||||||    
T  9999207 tagattttatactatgttatcttaaagttataagtgttgttataatttac------atttgatatggaaaaaaatatcatcttaattttgtatatatttt 9999300  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttat---actta-actaattatttgtagtat 538  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||   | ||| ||||||||||||||||||    
T  9999301 gaaatatctaaacattgcacatagcgattaaagtatttggatttattatatttatactaattatttgtagtat 9999373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 47691893 - 47691988
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| | ||||||||||||||||    
T  47691893 tatcatcttaattttgtatataatttgaaatatctaaacattgcacataacgattaaagtatttgaatttatacttatattaattatttgtagtat 47691988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 10234218 - 10234385
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnn-tatcatcttaattttgtatatattt 468  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||||||||       |||||||||||        |||||||||||||||||||||||||    
T  10234218 tagattttatactatgttatcttaaagttataagtgttgttataatttac------atttgatatggaaaaaaaatatcatcttaattttgtatatattt 10234311  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggatttat---actta-actaattatttgtagtat 538  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||   | ||| ||||||||||||||||||    
T  10234312 tgaaatatctaaacattgcacatagcgattaaagtatttggatttattatatttatactaattatttgtagtat 10234385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 373 - 538
Target Start/End: Original strand, 50408952 - 50409121
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgt---------ata 463  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||      |||||||||||        |||||||||||||||||         |||    
T  50408952 attttatattatgttatcttaaagttataagtgtggttataattta------aatttgatatgaaaaaaaatatcatcttaattttgttaatattgtata 50409045  T
Q  464 tattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  50409046 tattttgaaatatataaacattgcacataacgattaaagtatttgaatttatacttatactaattatttgtagtat 50409121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 10037432 - 10037596
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      |||| |||||         ||||||||||||||||||||||||||    
T  10037432 tagattttatattatgttatcttaaagttataattgtggttataattta------aattcgatatt-aaaaaaatatcatcttaattttgtatatatttt 10037524  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt--tatactt-aactaattatttgtagtat 538  Q
    |||||||| ||||||| || |||| ||| ||||||||||||||  |||||||  ||||||||||||||||||    
T  10037525 gaaatatccaaacattgcatataacgataaaagtatttggattactatacttgtactaattatttgtagtat 10037596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 11361046 - 11361210
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      |||||||||||        |||||||||||||||||||||| |||    
T  11361046 tagattttatattatgttatcttaaagttataattgtggttataattta------aatttgatatg-aaaaaaatatcatcttaattttgtatataattt 11361138  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt--tatactta-actaattatttgtagtat 538  Q
    |||||||||||||||| || ||||  || ||||||||||||||  |||| ||  ||||||||||||||||||    
T  11361139 gaaatatctaaacattgcatataaccataaaagtatttggattattatatttgtactaattatttgtagtat 11361210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 10040930 - 10041008
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatat--ctaaacattccacataatgattaaagtatttggatttatactta 520  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||    
T  10040930 tatcatcttaattttgtatatattttgaaatatgtctaaacattgcacataaggattaaagtatttggatttatactta 10041008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 10970338 - 10970167
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatctta---------attttgt 460  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||      ||||||||||||||       ||||||||||         |||||||    
T  10970338 tagattttatattatgttatcttaaagttataagtatggttataatt------taaatttgatatgg-aaaaaatatcatcttaattttgtttattttgt 10970246  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||| ||||| ||| ||||||||||||||||||    
T  10970245 atatattttgaaatatctaaacattgcacacaacgattaaagtatttggagttatagttatactaattatttgtagtat 10970167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 11367435 - 11367599
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||      |||| ||||||        ||||||||||||||||||||||||||    
T  11367435 tagattttatattatgttatcttaaagttataattgtcgttataattta------aattcgatatg-aaaaaaatatcatcttaattttgtatatatttt 11367527  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||| || || |||  ||||||| |||||||||  ||||||||  ||||||||||||||||||    
T  11367528 gaaatatctaaactttgcatatatcgattaaattatttggattattatacttgtactaattatttgtagtat 11367599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10108835 - 10108932
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  10108835 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 10108932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10230074 - 10230171
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  10230074 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 10230171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 15329926 - 15329833
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  15329926 atcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaagtatttggattgttatacttgtactaattatttgtagtat 15329833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 10109472 - 10109563
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttat---actta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||   | ||| ||||||||||||||||||    
T  10109472 ttaattttgtatatattttgaaatatctaaacattgcacatagcgattaaagtatttggatttattatatttatactaattatttgtagtat 10109563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 41764798 - 41764633
Alignment:
Q  370 tagattttatattatattatcttaaa-gttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatattt 468  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||      |||| ||||||        |||||||||||||||||||||||||    
T  41764798 tagattttatattatgttatcttaaaagttataattgtggttataattta------aattcgatatg-aaaaaaatatcatcttaattttgtatatattt 41764706  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||  | |||| ||| |||||||||||||  ||||||||  ||||||||||||| ||||    
T  41764705 tgaaatatctaaacattgtatataacgataaaagtatttggattattatacttgtactaattatttgttgtat 41764633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10230695 - 10230792
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttat---actta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||  |||||||||||||||||||||   | ||| ||||||||||||||||||    
T  10230695 tatcatcttaattttgtatatattttgaaatatctaaac-ttgcacatagcgattaaagtatttggatttattatatttatactaattatttgtagtat 10230792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 27273261 - 27273358
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  27273261 tatcatcttaattttatatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 27273358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 464 - 538
Target Start/End: Original strand, 52917633 - 52917708
Alignment:
Q  464 tattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||| |||||||||||||||  |||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  52917633 tattttaaaatatctaaacattggacataacgattaaagtatttggagttatacttatactaattatttgtagtat 52917708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 452 - 538
Target Start/End: Original strand, 31675 - 31764
Alignment:
Q  452 taattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  31675 taattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 31764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 448 - 538
Target Start/End: Original strand, 10233673 - 10233766
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  | ||||||||||||||||    
T  10233673 atcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtaataattatttgtagtat 10233766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 538
Target Start/End: Original strand, 23092403 - 23092496
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||| ||||||||||||||||||||||||||||| | || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  23092403 atcttatttttgtatatattttgaaatatctaaacactgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 23092496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 46912151 - 46912196
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataattta 418  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||    
T  46912151 attttatattatgttatcttaaagttataagtgtggttataattta 46912196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 52916754 - 52916802
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  52916754 tagattttatattatgttatcttaaatttataagtgtggttataattta 52916802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 10040861 - 10040909
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||| | |||||| |||||||||||||||    
T  10040861 tagattttatattatgttatcttacaattataagtgtggttataattta 10040909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 10109387 - 10109435
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||||||||    
T  10109387 tagattttatactatgttatcttaaagttataagtgttgttataattta 10109435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 15329996 - 15329949
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||||| |||||| ||| |||||||||||    
T  15329996 tagattttatattatgttatcttaaaattataattgt-gttataattta 15329949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 28960863 - 28961024
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||  |||||||| |      ||||||||||||       ||||||||||||||||||||||||||    
T  28960863 tagattttatattatgttatcttaaagttataagtgtacttataattga------aatttgatatggaaaaaa-tatcatcttaattttgtatatatttt 28960955  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatacttaactaattatttgtagtat 538  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28960956 gaaatatctaaacattgcaaataacgattaaagtatttggatttatacttaactaattatttgtagtat 28961024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 48240219 - 48240056
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||| ||||||||||      ||||| ||||||       ||||||||||||||||||||||||||    
T  48240219 tagattttatattgtgttatcttaaagttataagtgtgattataattta------aattttatatggaaaaaaatatcatcttaattttgtatatatttt 48240126  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||| |||||||| ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||    
T  48240125 gaaatatataaacattgcacataacgattaaactatttggatttatacttatattaattatttgtagtat 48240056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 533
Target Start/End: Original strand, 36206008 - 36206165
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||      |||||||||||        |||||| |||||||||||||||||||    
T  36206008 tagattttatattgtattatcttaaagttataaatgtagctataattta------aatttgatatg-aaaaaaatatcattttaattttgtatatatttt 36206100  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgt 533  Q
    |||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||||||    
T  36206101 gaaatatctaaacattgcatataatgattaaagtatttagatttatacttatactaattatttgt 36206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 7101827 - 7101922
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  7101827 tatcatcttaattttgtatataatttgaaatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 7101922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 445 - 538
Target Start/End: Complemental strand, 2454113 - 2454019
Alignment:
Q  445 atcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  2454113 atcatcttaattttgtatatattttgaaatatttaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 2454019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 370 - 508
Target Start/End: Complemental strand, 48776757 - 48776626
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||      |||| ||||||        |||||| |||||||||||||||||||    
T  48776757 tagattttatattatattatcttaaagttataattgtggttataattta------aattcgatatg-aaaaaaatatcattttaattttgtatatatttt 48776665  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttg 508  Q
    |||||||||||||||| || |||  ||||||||||||||    
T  48776664 gaaatatctaaacattgcatatatcgattaaagtatttg 48776626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 16043153 - 16043316
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| |||| ||||||||| || |||| |||||||||       |||||||||| |       ||||||||||||||||| ||||||||    
T  16043153 tagattttatattatgttattttaaagttaaaagtgtgattataatttc------aatttgatatagaaaaaaatatcatcttaattttgtctatatttt 16043246  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||| ||| |||| ||||||| ||| |||||||||||||||| ||||| | ||||||||||||||||    
T  16043247 gaaatatgtaaccattgcacataacgatcaaagtatttggatttaaacttatattaattatttgtagtat 16043316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 512
Target Start/End: Complemental strand, 25075285 - 25075150
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||      |||| |||| |        ||||||||||||||||||||||||||    
T  25075285 tagattttatattatgttatcttaaagttataattgtgattataattta------aattcgataag-aaaaaaatatcatcttaattttgtatatatttt 25075193  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt 512  Q
    |||||||||||||||| || |||| ||| ||||||||||||||    
T  25075192 gaaatatctaaacattgcatataacgataaaagtatttggatt 25075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 18147545 - 18147642
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  18147545 tatcatcttaattttgtatatattttgaaatatctaagcattgcacatagcgataaaaatatttggattattatacttgtactaattatttgtagtat 18147642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 36518795 - 36518892
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||| ||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  36518795 tatcattttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 36518892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 52499588 - 52499685
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||| ||||||    
T  52499588 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttatagtat 52499685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 16040815 - 16040978
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||       | | ||||||        ||||||||||||||| ||||||||||    
T  16040815 tagattttatattatgttatcttaaagttataactgtggttataattta-------aatcgatatg-aaaaaaatatcatcttaattttatatatatttt 16040906  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||| || |||| ||| ||| ||| |||||  ||||||||  ||||||||||||||||||    
T  16040907 gaaatatctaaacattgcatataacgataaaaatatatggattattatacttgtactaattatttgtagtat 16040978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 16749095 - 16748931
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      |||| ||||||        ||| || |||||||||||||||||||    
T  16749095 tagattttatattttgttatcttaaagttataattgtggttataattta------aattcgatatg-aaaaaaatataattttaattttgtatatatttt 16749003  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||||  | |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  16749002 gaaatatctaaacattgaatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 16748931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 37391507 - 37391411
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  37391507 tatcatcttaatttt-tatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 37391411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 538
Target Start/End: Complemental strand, 6312354 - 6312258
Alignment:
Q  445 atcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatt--tatactta-actaattatttgtagtat 538  Q
    |||||| |||||||||||||||||| ||||||||||||||| || |||| ||| ||| ||||||||||  |||| ||  ||||||||||||||||||    
T  6312354 atcatcataattttgtatatattttaaaatatctaaacattgcatataacgataaaaatatttggattattatatttgtactaattatttgtagtat 6312258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 12450841 - 12450920
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||         ||||||||||||||| ||||||||||||||||||    
T  12450841 ttaattttgtatatattttgaaatatctaaacattccacgtaacga---------ttggatttatacttatactaattatttgtagtat 12450920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 12450757 - 12450805
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  12450757 tagattttatattatgttatcttaaagttataagtgtggctataattta 12450805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 373 - 538
Target Start/End: Original strand, 10186342 - 10186505
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatctt---aattttgtatatatttt 469  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||      ||||||||||||       |||||||||   |||||||||||||||||    
T  10186342 attttatattatgttatcttaaagttataactgtggttataattta------aatttgatatggaaaaaaatatcatcttgttaattttgtatatatttt 10186435  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  10186436 gaaatatctaaacattgcacataacgattaaaatatttggatttatacttatactaattatttgtagtat 10186505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 4221445 - 4221273
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatctta---------attttgt 460  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      ||||||||||||       ||||||||||         |||||||    
T  4221445 tagattttatattatgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaaatatcatcttagttttgttaattttgt 4221352  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  4221351 atatattttgaaatatctaaacattgcacataacgattaaagtatttgtatttatacttatactaattatttgtagtat 4221273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 12518404 - 12518567
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| |||||||||||||| || |||| ||||||||||      ||||| |||| |       ||||||| |||||||||||| |||||    
T  12518404 tagattttatattatgttatcttaaagttaaaagtgtgattataattta------aatttaatatagaaaaaaatatcatcctaattttgtataaatttt 12518497  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||||||| | ||||||||||||||||    
T  12518498 gaaatatctaaacattgcacataacgatcaaagtatttggatttatacttatattaattatttgtagtat 12518567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 12516176 - 12516341
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    |||||||||||||||  |||||||||||||||| |||| ||||||||||      |||| ||||||        ||||||||||||||||||||||||||    
T  12516176 tagattttatattatgatatcttaaagttataattgtgtttataattta------aattcgatatgaaaaaaaatatcatcttaattttgtatatatttt 12516269  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  12516270 gaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 12516341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 15330329 - 15330492
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      |||| ||||||        ||||||||||||||||||||||||||    
T  15330329 tagattttatattatgttatcttaaagttataattgtggttataattta------aattggatatg--aaaaaatatcatcttaattttgtatatatttt 15330420  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||| |||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  15330421 gaaatatttaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 15330492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 30880927 - 30881015
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||  ||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  30880927 ttaattttgtatatatttaaaaatatctaaacattgcatataacgattaaagtatttggatttatacttatactaattatttgtagtat 30881015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 14906355 - 14906431
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta 520  Q
    |||| |||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  14906355 tatcttcttaattctgtaaatattttgaaatatctaaatattgcacataatgattaaagtatttggatctatactta 14906431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 31512855 - 31512758
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||||||| || || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  31512855 tatcatcttaattttgtatatattttgaaatatctaaacgttgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 31512758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 512
Target Start/End: Original strand, 24195691 - 24195826
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      |||| ||||||        ||| ||||||||||||||||||||||    
T  24195691 tagattttatattttgttatcttaaagttataattgtggttataattta------aattcgatatg-aaaacaatataatcttaattttgtatatatttt 24195783  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt 512  Q
    |||||||||||||||| || |||| ||| ||| ||||| ||||    
T  24195784 gaaatatctaaacattgcatataacgataaaaatattttgatt 24195826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 29642713 - 29642620
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| || || | || ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  29642713 atcttaattttgtatatattttgaaatatctaaacgttgcatacaacgataaaaatatttggattattatacttgtactaattatttgtagtat 29642620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 14906291 - 14906336
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataattta 418  Q
    |||||||||||| |||||||||||||||||||||| || |||||||    
T  14906291 attttatattatgttatcttaaagttataaatgtgattgtaattta 14906336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 98257 - 98087
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgt--------- 460  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      ||||||||||||       |||||||||||||||||             
T  98257 tagattttatattatgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaa-tatcatcttaattttgttaattttgt 98165  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggatttatacttaactaattatttgtagtat 538  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  98164 atatattttgaaatatctaaacattgcacataacgattaaagtatttggatttatacttaactaattatttgtagtat 98087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 6088007 - 6088170
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnn-tatcatcttaattttgtatatattt 468  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||      ||||| ||||||        |||||||||||||||||||||| ||    
T  6088007 tagattttatattatgttat-ttaaagttataaatgtggttataattta------aatttaatatggaaaaaaaatatcatcttaattttgtatatagtt 6088099  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  6088100 tgaaatatctaaacattgcacataacgattaaagtatttgaatttatacttatactaattatttgtagtat 6088170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 516
Target Start/End: Original strand, 18115597 - 18115736
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||      ||||||| ||||       ||||||||||||||||||||||||||    
T  18115597 tagattttatattatgttatcttaaagttataagtgtggttttaattta------aatttgacatggaaaaaa-tatcatcttaattttgtatatatttt 18115689  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttata 516  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18115690 gaaatatctaaacattgcacttaatgattaaagtatttggatttata 18115736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 516
Target Start/End: Complemental strand, 43525309 - 43525170
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||      ||||||  ||||       ||||||||||||||||||||||||||    
T  43525309 tagattttatattatgttatcttaaagttataagtgtggttttaattta------aatttgtcatggaaaaaa-tatcatcttaattttgtatatatttt 43525217  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttata 516  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  43525216 gaaatatctaaacattgcacataatgattaaagtatttggatttata 43525170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 14194227 - 14194139
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  14194227 ttaattttgtatatattttgaaatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 14194139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 370 - 534
Target Start/End: Complemental strand, 15034009 - 15033850
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| |||||||||||||| || |||| ||||||||||      |||||||||| |       | |||||||||||||| |||||||||    
T  15034009 tagattttatattatgttatcttaaagttaaaagtgtgattataattta------aatttgatattgaaaaaaatttcatcttaattttgaatatatttt 15033916  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgta 534  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||||||| | ||||||||||||    
T  15033915 gaaatatctaaacattgcacataacgatcaaagtatttggatttatacttatattaattatttgta 15033850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 2262429 - 2262258
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgt--------- 460  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||      ||||||||||||       |||||||||||||||||             
T  2262429 tagattttatattatgttatcttaaagttataagtatggttataattta------aatttgatatggaaaaaa-tatcatcttaattttgttaattttat 2262337  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggatttatacttaact-aattatttgtagtat 538  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  2262336 atatattttgaaatatctaaacattgcagataacgattaaagtatttgaatttatacttaactaaattatttgtagtat 2262258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 17872255 - 17872167
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||  ||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  17872255 ttaattttgtatatatttaaaaatatctaaacattgcatataacgattaaagtatttggatttatacttatactaattatttgtagtat 17872167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 25544174 - 25544010
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      |||| | ||||        ||||||||||||||||||||||||||    
T  25544174 tagattttatattatgttatcttaaagttataattgtggttataattta------aattcgttatg-aaaaaaatatcatcttaattttgtatatatttt 25544082  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||  || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  25544081 gaaatatctaaacatcgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 25544010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 512
Target Start/End: Original strand, 4050596 - 4050731
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||      |||| |||| |        ||||||||||||||||||||||||||    
T  4050596 tagattttatattatgttatcttaaagttataattgtgtttataattta------aattcgataag-aaaaaaatatcatcttaattttgtatatatttt 4050688  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt 512  Q
    |||||||||||||||| || |||| ||| ||||||||||||||    
T  4050689 gaaatatctaaacattgcatataacgataaaagtatttggatt 4050731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10023988 - 10024085
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  10023988 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 10024085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 30347844 - 30347747
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||  ||||||||  ||||||||||| ||||||    
T  30347844 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataatgataaaaatatttggattattatacttgtactaattatttatagtat 30347747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 26831498 - 26831589
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttat---actta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||   | ||| ||||||||||||||||||    
T  26831498 ttaattttgtatatattttgaaatatctaaacattgcacatagcgattaaagtatttggatttattatatttatactaattatttgtagtat 26831589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 533
Target Start/End: Original strand, 30313240 - 30313331
Alignment:
Q  445 atcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgt 533  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||  |||||||||||||    
T  30313240 atcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgt 30313331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 24631164 - 24631067
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||| ||||||    
T  24631164 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttatagtat 24631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 26792667 - 26792764
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||| ||||    
T  26792667 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgttgtat 26792764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 43448270 - 43448434
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      |||| ||||||        ||| ||||||||||||||||||||||    
T  43448270 tagattttatattttgttatcttaaagttataattgtggttataattta------aattcgatatg-aaaacaatataatcttaattttgtatatatttt 43448362  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||| || |||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  43448363 gaaaaatttaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 43448434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 444 - 535
Target Start/End: Complemental strand, 8429939 - 8429845
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtag 535  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  |||||||||||||||    
T  8429939 tatcatcttcattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtag 8429845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 27879942 - 27880040
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagta-tttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||| || |||||||  ||||||||  ||||||||||||||||||    
T  27879942 tatcatcttaattttgtatatattttgaaatatctaaaaattccatataacgataaaaatattttggattattatacttgtactaattatttgtagtat 27880040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 37371770 - 37371823
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgat 497  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  37371770 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataatgat 37371823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 538
Target Start/End: Original strand, 37260185 - 37260271
Alignment:
Q  456 tttgtatatattttgaa-atatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||| | ||||||||||||| || |||||||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  37260185 tttgtatatattttgtatatatctaaacattgcatataatgataaaagtatttggattattatacttgtactaattatttgtagtat 37260271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 538
Target Start/End: Original strand, 3688820 - 3688899
Alignment:
Q  462 tatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||| ||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  3688820 tataatttgaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 3688899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 538
Target Start/End: Complemental strand, 3877965 - 3877886
Alignment:
Q  462 tatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||| ||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  3877965 tataatttgaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 3877886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 14194313 - 14194265
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  14194313 tagattttatattatgttatcttaaagttataagtgtagttataattta 14194265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 125007 - 125178
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaa---------ttttgt 460  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      ||||||||||||       |||||||||||         ||||||    
T  125007 tagattttatattatgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaaatatcatcttaatcttgttaattttgt 125100  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggatttatacttaactaattatttgtagtat 538  Q
    |||||||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  125101 atatattttgcaatatctaaacattgcacatagcgattaaagtatttggatttatacttaactaattatttgtagtat 125178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 7e-35; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 373 - 534
Target Start/End: Complemental strand, 17687779 - 17687621
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatctt---aattttgtatatatttt 469  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||      ||||||||||||       |||||||||   |||||||||||||||||    
T  17687779 attttatattatgttatcttaaagttataactgtggttataattta------aatttgatatggaaaaaaatatcatcttgttaattttgtatatatttt 17687686  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgta 534  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  17687685 gaaatatctaaacattgcacataacgattaaagta-ttggatttatacttatactaattatttgta 17687621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 24244735 - 24244823
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  24244735 ttaattttgtatatattttgaaatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 24244823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 373 - 520
Target Start/End: Original strand, 35608690 - 35608831
Alignment:
Q  373 attttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatattttgaa 472  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||      ||||| |||||         ||||||||||||||||||||||||||||    
T  35608690 attttatattatgttatcttaaagttataagtgtggttataattta------aatttcatatgaaaaaaaagatcatcttaattttgtatatattttgaa 35608783  T
Q  473 atatctaaacattccacataatgattaaagtatttggatttatactta 520  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  35608784 atatctaaacattgcacataacgattaaagtatctggatttatactta 35608831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 371 - 538
Target Start/End: Complemental strand, 2881911 - 2881740
Alignment:
Q  371 agattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgt---------a 461  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||      ||||||||||||       |||||||||||||||||         |    
T  2881911 agattttatattgtgttatcttaaagttataagtgtggttataattta------aatttgatatggaaaaaaatatcatcttaattttgttaattttgta 2881818  T
Q  462 tatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||| ||||||||||||||||||    
T  2881817 tatattttgaaatatctaaacattgcacataacaattaaagtatttgaatttatacttatactaattatttgtagtat 2881740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 27508245 - 27508333
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  27508245 ttaattttgtatatattttaaaatatctaaacattgcacataacgattaaagtatttgaatttatacttatactaattatttgtagtat 27508333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 3641932 - 3642020
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||| |||| | ||||||||||||||||    
T  3641932 ttaattttgtatatattttgaaatatccaaacattgcacataacgattaaagtatttagatttattcttatattaattatttgtagtat 3642020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 36048058 - 36047961
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  36048058 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 36047961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 40489047 - 40488956
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat---ttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||   ||||||||| ||||||||||||||||||    
T  40489047 ttaattttgtatatatttttaaatatctaaacattgcacataacgattaaagtatttagatttattatacttatactaattatttgtagtat 40488956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 24270381 - 24270217
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      |||| ||||||        ||| ||||||||||||||||||||||    
T  24270381 tagattttatattttgttatcttaaagttataattgtggttataattta------aattcgatatg-aaaaatatataatcttaattttgtatatatttt 24270289  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggatt--tatactta-actaattatttgtagtat 538  Q
    |||||||||||||||| || |||| ||| ||| ||||||||||  ||||| |  ||||||||||||||||||    
T  24270288 gaaatatctaaacattgcatataacgataaaaatatttggattattatacctgtactaattatttgtagtat 24270217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 26955286 - 26955189
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| ||||| |||  ||||||||  ||||||||||||||||||    
T  26955286 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttagattattatacttgtactaattatttgtagtat 26955189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 39442033 - 39441936
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||| ||||||||    
T  39442033 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggatcattatacttgtactaattatatgtagtat 39441936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 3641849 - 3641897
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  3641849 tagattttatattgtgttatcttaaagttataagtgtggttataattta 3641897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 535
Target Start/End: Complemental strand, 41921538 - 41921443
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgat-taaagtatttggat--ttatactt-aactaattatttgtag 535  Q
    ||||||||| |||||||||||||||| ||||||||||||||| || |||| |||  ||| |||||||||  ||||||||  |||||||||||||||    
T  41921538 tatcatcttcattttgtatatattttaaaatatctaaacattgcatataacgataaaaaatatttggattattatacttgtactaattatttgtag 41921443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 538
Target Start/End: Original strand, 21394225 - 21394318
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||| ||||||||||||||| ||||||||||||| | || |||| ||| ||| ||||| |||  ||||||||  ||||||||||||||||||    
T  21394225 atcttatttttgtatatattttaaaatatctaaacactgcatataacgataaaaatatttagattattatacttgtactaattatttgtagtat 21394318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 485
Target Start/End: Complemental strand, 28667541 - 28667500
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacatt 485  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  28667541 tatcatcttcattttgtatatattttaaaatatctaaacatt 28667500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 485
Target Start/End: Complemental strand, 37826375 - 37826334
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacatt 485  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  37826375 tatcatcttcattttgtatatattttaaaatatctaaacatt 37826334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 24244656 - 24244703
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  24244656 tagattttatattatgttatcttaaa-ttataagtgtggttataattta 24244703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 13424496 - 13424584
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  13424496 ttaattttgtatatattttgaaatatctaaacattgcacataacgattaaagtatttggatttatacttatactaattatttgtagtat 13424584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 14713061 - 14713233
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaa---------ttttgt 460  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||      ||||||||||||       |||||||||||         ||||||    
T  14713061 tagattttatattatgttatcttaaagttataagtatggttataattta------aatttgatatggaaaaaaatatcatcttaattttgttaattttgt 14713154  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggatttatacttaact-aattatttgtagtat 538  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||||    
T  14713155 atatattttgaaatatctaaacattgcacataacgattaaagtatttggatttatatttaactaaattatttgtagtat 14713233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 7780601 - 7780698
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatac-ttaactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  |||||| || ||||||||||||||||||    
T  7780601 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttttactaattatttgtagtat 7780698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 7820691 - 7820788
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatac-ttaactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  |||||| || ||||||||||||||||||    
T  7820691 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttttactaattatttgtagtat 7820788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 25219932 - 25219835
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  25219932 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 25219835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 37915468 - 37915303
Alignment:
Q  370 tagattttatattatattatcttaaa-gttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatattt 468  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||      |||| ||||||        |||||||||||||||||||||||||    
T  37915468 tagattttatattatgttatcttaaaagttataattgtggttataattta------aattcgatatg-aaaaaaatatcatcttaattttgtatatattt 37915376  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||  | |||| ||| |||||||||||||  ||||||||  ||||||||||||| ||||    
T  37915375 tgaaatatctaaacattgtatataacgataaaagtatttggattattatacttgtactaattatttgttgtat 37915303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 448 - 538
Target Start/End: Original strand, 14764490 - 14764580
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatacttaactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||   ||||||||||||||||    
T  14764490 atcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaagtatttggattgttatactt--gtaattatttgtagtat 14764580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 21115106 - 21114941
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaatttt-gtatatattt 468  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||      |||| ||||||        ||| ||||||||||| ||||||||||    
T  21115106 tagattttatattttgttatcttaaagttataattgtggttataattta------aattcgatatg-aaaaatatataatcttaatttttgtatatattt 21115014  T
Q  469 tgaaatatctaaacattccacataatgattaaagtatttggat--ttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||| || |||| ||| ||| |||||||||  |||||| || ||||||||||||||||||    
T  21115013 tgaaatatctaaacattgcatataacgataaaaatatttggattattatacctatactaattatttgtagtat 21114941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 30306000 - 30306069
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggattt 513  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||||    
T  30306000 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattt 30306069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Complemental strand, 31979954 - 31979790
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||||||      ||||||| |||        ||| |||||||||||||||||||||     
T  31979954 tagattatatattatgttatcttaaagttataattgtggttataattta------aatttgaaatg-aaaaaaatataatcttaattttgtatatatttc 31979862  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
     ||||| ||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  31979861 aaaatagctaaacattgcatataacgatcaaagtatttggattattatacttgtactaattatttgtagtat 31979790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 13424412 - 13424460
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||    
T  13424412 tagattttatattatgttatcttaaagttaaaagtgtggttataattta 13424460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 33863172 - 33863123
Alignment:
Q  370 tagattttatattatattatcttaaa-gttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  33863172 tagattttatattatgttatcttaaaagttataattgtggttataattta 33863123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 13351 - 13446
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  13351 tatcatcttaattttgtatatattttgaaatatctaaacattgcacgtaacgattaaaatatttggatttatacttatactaattatttgtagtat 13446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 370 - 520
Target Start/End: Complemental strand, 1598 - 1454
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      ||||||| |||        ||||||||||||||||||||||||||    
T  1598 tagattttatattatgttatcttaaagttataagtgtggttataattta------aatttgacatg--aaaaaatatcatcttaattttgtatatatttt 1507  T
Q  470 gaaatat--ctaaacattccacataatgattaaagtatttggatttatactta 520  Q
    |||||||  ||||||||| ||||||| ||||||||||||||||||||||||||    
T  1506 gaaatatatctaaacattgcacataaagattaaagtatttggatttatactta 1454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 17800 - 17965
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||| ||| ||||||||||||||||| ||| ||||||||||       |||||||||||        ||||||||||||||||||||||||||    
T  17800 tagattttatactatgttatcttaaagttataagtgttgttataatttt------aatttgatatg-aaaaaaatatcatcttaattttgtatatatttt 17892  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat---ttatactta-actaattatttgtagtat 538  Q
    ||||||| |||||||| ||||||| |||||||||||||||||   ||||||||| ||||||||||||||||||    
T  17893 gaaatatttaaacattgcacataacgattaaagtatttggatttattatacttatactaattatttgtagtat 17965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 3671 - 3583
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| | ||||||||||||||||    
T  3671 ttaattttgtatatattttgaaatatctaaacattgcacataacgattaaagtctttggatttatacttataataattatttgtagtat 3583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 3755 - 3706
Alignment:
Q  369 gtagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  3755 gtagattttatattatgttatcttaaagttataagtgtggttataattta 3706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 164316 - 164480
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      |||||||||||        |||||||||||||||||||||| |||    
T  164316 tagattttatattatgttatcttaaagttataattgtggttataattta------aatttgatatg-aaaaaaatatcatcttaattttgtatataattt 164408  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
     ||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  164409 aaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 164480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 172431 - 172595
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      |||||||||||        |||||||||||||||||||||| |||    
T  172431 tagattttatattatgttatcttaaagttataattgtggttataattta------aatttgatatg-aaaaaaatatcatcttaattttgtatataattt 172523  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
     ||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  172524 aaaatatctaaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgtagtat 172595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 461 - 642
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaa---------ttttgt 460  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||    ||||||||||||||       |||||||||||         ||||||    
T  461 tagattttatattatgttatcttaaagttataagtgttgttataatttaaatttaaatttgatatggaaaaacatatcatcttaattttgttaattttgt 560  T
Q  461 atatattttgaaatatctaaacattccacataatgattaaagtatttggat---ttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||   ||||||||| ||||||||||||||||||    
T  561 atatattttgaaatatctaaacattgcacataacgattgaagtatttgaatttattatacttatactaattatttgtagtat 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 44863 - 44941
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatat--ctaaacattccacataatgattaaagtatttggatttatactta 520  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||    
T  44863 tatcatcttaattttgtatatattttgaaatatatctaaacattgcacataaagattaaagtatttggatttatactta 44941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 44799 - 44845
Alignment:
Q  372 gattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||||    
T  44799 gattttatattatgttatcttaaagttataagtctgattataattta 44845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10002 - 10099
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  10002 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgatgaaagtatttggattattatacttgtactaattatttgtagtat 10099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 6588 - 6497
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat---ttatactta-actaattatttgtagtat 538  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||   ||||||||| ||||||||||||||||||    
T  6588 ttaattttatatatattttgaaatatctaaacattgcacataacgattaaagtatttggatttattatacttatactaattatttgtagtat 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 6671 - 6623
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||| ||| ||||||||||||||||| ||| |||||||||||    
T  6671 tagattttatactatgttatcttaaagttataagtgttgttataattta 6623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 370 - 534
Target Start/End: Original strand, 23383 - 23543
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||      || | ||||||        ||||||||||||||||||||||||||    
T  23383 tagattttatattatgttatcttaaagttataattgtggttataattta------aactcgatatg-aaaaaaatatcatcttaattttgtatatatttt 23475  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgta 534  Q
    ||||||| |||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||    
T  23476 gaaatatataaacattgcatataacgataaaagtatttggattattatacttgtactaattatttgta 23543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 370 - 538
Target Start/End: Original strand, 18248 - 18412
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataatttattagtaaatttgatatggnnnnnnntatcatcttaattttgtatatatttt 469  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||||||      ||||||| |||        ||| |||||||||||||||||||||     
T  18248 tagattatatattatgttatcttaaagttataattgtggttataattta------aatttgaaatg-aaaaaaatataatcttaattttgtatatatttc 18340  T
Q  470 gaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
     ||||| ||||||||| || |||| ||| |||||||||||||  ||||||||  ||||||||||||||||||    
T  18341 aaaatagctaaacattgcatataacgatcaaagtatttggattattatacttgtactaattatttgtagtat 18412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 125 - 28
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  125 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 28  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 451 - 538
Target Start/End: Original strand, 185432 - 185523
Alignment:
Q  451 ttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat---ttatactta-actaattatttgtagtat 538  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||   ||||||||| ||||||||||||||||||    
T  185432 ttaattttgtatatattttaaaatatctaaacattgcacataacgattaaagtatttgtatttattatacttatactaattatttgtagtat 185523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 185349 - 185397
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| |||||||||| |||||| ||| |||||||||||    
T  185349 tagattttatattatgttatcttaaaattataagtgttgttataattta 185397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 10276 - 10373
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||||||||||||||||||||||||||||||||| || || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  10276 tatcatcttaattttgtatatattttgaaatatctaaacgttgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 10373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 4892 - 4795
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||| ||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  4892 tatcatcttaattttgtatatattttgaaatatcaaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 4795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 50303 - 50206
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  50303 tatcatctttattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 50206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 133226 - 133133
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  133226 atcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacttgtactaattatttgtagtat 133133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 133297 - 133249
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||| | |||||||||| |||||| |||||||||||||||    
T  133297 tagattttatattttgttatcttaaatttataattgtggttataattta 133249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 13320 - 13417
Alignment:
Q  444 tatcatcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||| |||||  ||  ||||||||  ||||||||||||||||||    
T  13320 tatcatcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttaaattattatacttgtactaattatttgtagtat 13417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 311054 - 310961
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattccacataatgattaaagtatttggatt--tatactta-actaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| ||| ||||||||||  ||||| |  ||||||||||||||||||    
T  311054 atcttaattttgtatatattttgaaatatctaaacattgcatataacgataaaaatatttggattattatacatgtactaattatttgtagtat 310961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 331502 - 331454
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  331502 tagattttatattatgttatcttaaagttataattgtggttataattta 331454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 311125 - 311077
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||| | |||||||||| |||||| |||||||||||||||    
T  311125 tagattttatattttgttatcttaaatttataattgtggttataattta 311077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 448 - 538
Target Start/End: Complemental strand, 29928 - 29832
Alignment:
Q  448 atcttaattttgtatatattttgaaatatctaaacattcca---cataatgattaaagtatttggat--ttatactt-aactaattatttgtagtat 538  Q
    |||||||||||||||||||||||||||||||||||||| ||    |||||||| ||| |||||||||  ||||||||  ||||||||||||||||||    
T  29928 atcttaattttgtatatattttgaaatatctaaacattgcatataataatgataaaaatatttggattattatacttgtactaattatttgtagtat 29832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 23182 - 23230
Alignment:
Q  370 tagattttatattatattatcttaaagttataaatgtggttataattta 418  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  23182 tagattttatattatgttatcttaaagttataagtgtggttataattta 23230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1076 times since January 2019
Visitors: 5825