View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0802_low_14 (Length: 449)

Name: NF0802_low_14
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0802_low_14
NF0802_low_14
[»] chr4 (1 HSPs)
chr4 (6-421)||(25591328-25591743)
[»] chr6 (2 HSPs)
chr6 (302-410)||(17039697-17039805)
chr6 (171-298)||(17039532-17039659)
[»] chr7 (2 HSPs)
chr7 (299-414)||(35936583-35936698)
chr7 (153-277)||(35936750-35936874)
[»] chr1 (7 HSPs)
chr1 (299-414)||(26625738-26625853)
chr1 (299-414)||(26635149-26635264)
chr1 (299-414)||(49118267-49118382)
chr1 (153-277)||(26625905-26626029)
chr1 (153-277)||(26635316-26635440)
chr1 (171-299)||(37468532-37468660)
chr1 (153-277)||(49118091-49118215)
[»] chr2 (2 HSPs)
chr2 (299-414)||(21692213-21692328)
chr2 (153-277)||(21692037-21692161)
[»] chr8 (2 HSPs)
chr8 (302-414)||(17605309-17605421)
chr8 (171-298)||(17605455-17605582)


Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Original strand, 25591328 - 25591743
Alignment:
Q  6 ctccaagaatatatcacatgatgttgccatttctgagtttgtgatagttgcatacggcgcttagagtagaggtaaaagttgtgtcatatgcgacatgtcc 105  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25591328 ctccaagaatatatcacatgatgttgccatttatgagtttgtgacagttgcatacggcgcttagagtagaggtaaaagttgtgtcatatgcgacatgtcc 25591427  T
Q  106 aatgcgacatgtgatatgctggttgtcttgtgaaagagaaaatgcacgggaaggtgatcatgaaagggcctaaagtggggcgattgtttcagatccagtt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25591428 aatgcgacatgtgatatgctggttgtcttgtgaaagagaaaatgcacgggaaggtgatcatgaaagggcctaaagtggggcgattgttacagatccagtt 25591527  T
Q  206 tattttcggtcatttatctctcgcgtgtaaaaatgttttgaattcttgtgagaattggcaaataaaattgggtcatataaactttgttgttttaaataaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25591528 tattttcggtcatttatctctcgcgtgtaaaaatgttttgaattcttgtgagaattggcaaataaaattgggtcatataaactttgttgttttaaataaa 25591627  T
Q  306 aatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttccacttgtt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25591628 aatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacaattccttttccgtttggtgtctatcgtgcttccacttgtt 25591727  T
Q  406 ttgagatgacccatat 421  Q
    ||||||||||||||||    
T  25591728 ttgagatgacccatat 25591743  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 17039697 - 17039805
Alignment:
Q  302 taaaaatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttccact 401  Q
    ||||||| ||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||| || | ||||| | ||||||||||||||    
T  17039697 taaaaatattgtttctaatgcctctgtgtcatgttctgtttgcaaattggctaaaagtaaaacacttcctttcccatctggtgcccatcgtgcttccact 17039796  T
Q  402 tgttttgag 410  Q
    |||| ||||    
T  17039797 tgttatgag 17039805  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 17039532 - 17039659
Alignment:
Q  171 gggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattcttgtgagaattggcaaataa 270  Q
    ||||||||||||||  | |||||||   |||| ||||||| |  ||| |||||||| || ||||| |||||||||||||||| |||| ||||||| | ||    
T  17039532 gggcctaaagtgggaaggttgtttccactccaatttatttccaatcagttatctcttgcttgtaacaatgttttgaattcttatgaggattggcatagaa 17039631  T
Q  271 aattgggtcatataaactttgttgtttt 298  Q
    ||||| |||||  ||| | |||||||||    
T  17039632 aattgtgtcatccaaattctgttgtttt 17039659  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 414
Target Start/End: Complemental strand, 35936698 - 35936583
Alignment:
Q  299 aaataaaaatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttcc 398  Q
    ||||||| | || |||| || ||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||  ||||   ||||||| |||    
T  35936698 aaataaacaagtcgtttgtactgcttctatttcatgtcctgtttgcaaattggctaaaagtaaaacacttccttttccgtcaggtgctcatcgtgcatcc 35936599  T
Q  399 acttgttttgagatga 414  Q
    | ||||||||||||||    
T  35936598 aattgttttgagatga 35936583  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 35936874 - 35936750
Alignment:
Q  153 gggaaggtgatcatgaaagggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattctt 252  Q
    ||||| ||||||  ||| ||||||||||||||  ||||||||| | | ||||||||||   ||||||||||||| || ||||| ||||||||||| ||||    
T  35936874 gggaaagtgatcgcgaaggggcctaaagtgggaagattgtttccgcttcagtttatttctagtcatttatctcttgcttgtaataatgttttgaactctt 35936775  T
Q  253 gtgagaattggcaaataaaattggg 277  Q
     |||| ||||||| | |||||||||    
T  35936774 atgaggattggcatagaaaattggg 35936750  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 414
Target Start/End: Complemental strand, 26625853 - 26625738
Alignment:
Q  299 aaataaaaatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttcc 398  Q
    ||||||| | || |||| || ||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||  ||||   ||||||| |||    
T  26625853 aaataaacaagtcgtttgtactgcttctatttcatgtcctgtttgcaaattggctaaaagtaaaacacttccttttccgtcaggtgctcatcgtgcatcc 26625754  T
Q  399 acttgttttgagatga 414  Q
    | ||||||||||||||    
T  26625753 aattgttttgagatga 26625738  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 414
Target Start/End: Complemental strand, 26635264 - 26635149
Alignment:
Q  299 aaataaaaatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttcc 398  Q
    ||||||| | || |||| || ||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||  ||||   ||||||| |||    
T  26635264 aaataaacaagtcgtttgtactgcttctatttcatgtcctgtttgcaaattggctaaaagtaaaacacttccttttccgtcaggtgctcatcgtgcatcc 26635165  T
Q  399 acttgttttgagatga 414  Q
    | ||||||||||||||    
T  26635164 aattgttttgagatga 26635149  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 414
Target Start/End: Original strand, 49118267 - 49118382
Alignment:
Q  299 aaataaaaatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttcc 398  Q
    ||||||| | || |||| || ||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||  ||||   ||||||| |||    
T  49118267 aaataaacaagtcgtttgtactgcttctatttcatgtcctgtttgcaaattggctaaaagtaaaacacttccttttccgtcaggtgctcatcgtgcatcc 49118366  T
Q  399 acttgttttgagatga 414  Q
    | ||||||||||||||    
T  49118367 aattgttttgagatga 49118382  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 26626029 - 26625905
Alignment:
Q  153 gggaaggtgatcatgaaagggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattctt 252  Q
    ||||| ||||||  ||| ||||||||||||||  ||||||||| | | ||||||||||   ||||||||||||| || ||||| ||||||||||| ||||    
T  26626029 gggaaagtgatcgcgaaggggcctaaagtgggaagattgtttccgcttcagtttatttctagtcatttatctcttgcttgtaataatgttttgaactctt 26625930  T
Q  253 gtgagaattggcaaataaaattggg 277  Q
     |||| ||||||| | |||||||||    
T  26625929 atgaggattggcatagaaaattggg 26625905  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 26635440 - 26635316
Alignment:
Q  153 gggaaggtgatcatgaaagggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattctt 252  Q
    ||||| ||||||  ||| ||||||||||||||  ||||||||| | | ||||||||||   ||||||||||||| || ||||| ||||||||||| ||||    
T  26635440 gggaatgtgatcgcgaaggggcctaaagtgggaagattgtttccgcttcagtttatttctagtcatttatctcttgcttgtaataatgttttgaactctt 26635341  T
Q  253 gtgagaattggcaaataaaattggg 277  Q
     |||| ||||||| | |||||||||    
T  26635340 atgaggattggcatagaaaattggg 26635316  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 37468660 - 37468532
Alignment:
Q  171 gggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattcttgtgagaattggcaaataa 270  Q
    ||||||||||||  |||||||||||  ||||| |||||||   |||||||||||||  |||||| |||| ||||||||||||  ||| |||| || | ||    
T  37468660 gggcctaaagtgaagcgattgtttccaatccaatttatttctagtcatttatctcttacgtgtacaaatattttgaattcttacgaggattgacatagaa 37468561  T
Q  271 aattgggtcatataaactttgttgtttta 299  Q
    |||||||||||  ||||| ||||||||||    
T  37468560 aattgggtcatccaaactctgttgtttta 37468532  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 49118091 - 49118215
Alignment:
Q  153 gggaaggtgatcatgaaagggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattctt 252  Q
    ||||| ||||||  ||| ||||||||||||||  ||||||||| | | ||||||||||   ||||||||||||| || ||||| ||||||||||| ||||    
T  49118091 gggaaagtgatcgcgaaggggcctaaagtgggaagattgtttccgcttcagtttatttctagtcatttatctcttgcttgtaataatgttttgaactctt 49118190  T
Q  253 gtgagaattggcaaataaaattggg 277  Q
     |||| ||||||| | |||||||||    
T  49118191 atgaggattggcatagaaaattggg 49118215  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 414
Target Start/End: Original strand, 21692213 - 21692328
Alignment:
Q  299 aaataaaaatgttgtttctaatgcctctatttcatgctcta-tttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttc 397  Q
    ||||||| | || |||| || ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||  ||||   ||||||| ||    
T  21692213 aaataaacaagtcgtttgtactgcttctatttcatg-tctagtttgcaaattggctaaaagtaaaacacttccttttccgtcaggtgctcatcgtgcatc 21692311  T
Q  398 cacttgttttgagatga 414  Q
    || ||||||||||||||    
T  21692312 caattgttttgagatga 21692328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 21692037 - 21692161
Alignment:
Q  153 gggaaggtgatcatgaaagggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattctt 252  Q
    ||||||||||||  ||| ||||||||||||||  ||||||||| | | ||||||||||    ||||||||||||  | ||||| ||||||||||||||||    
T  21692037 gggaaggtgatcgcgaaggggcctaaagtgggaagattgtttccgcttcagtttatttctaatcatttatctcttccttgtaataatgttttgaattctt 21692136  T
Q  253 gtgagaattggcaaataaaattggg 277  Q
     |||| ||||||| | |||||||||    
T  21692137 atgaggattggcatagaaaattggg 21692161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 17605421 - 17605309
Alignment:
Q  302 taaaaatgttgtttctaatgcctctatttcatgctctatttgcaaattggctaaaagtaaaacacttccttttccgtttggtgtctatcgtgcttccact 401  Q
    ||||||||||||||||||||||||| | ||||| | | | |||||| | || |||| ||||||||||||||| |||| |||||   |||||||||| | |    
T  17605421 taaaaatgttgtttctaatgcctctgtgtcatgttttgtatgcaaactagccaaaactaaaacacttcctttcccgtctggtgctcatcgtgcttctagt 17605322  T
Q  402 tgttttgagatga 414  Q
    |||||||||||||    
T  17605321 tgttttgagatga 17605309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 17605582 - 17605455
Alignment:
Q  171 gggcctaaagtggggcgattgtttcagatccagtttattttcggtcatttatctctcgcgtgtaaaaatgttttgaattcttgtgagaattggcaaataa 270  Q
    ||||||||||||||  |||||||||   | |||||| ||| |  |||  ||||||| || ||||| |||||||||||||||| |||| | ||||| | ||    
T  17605582 gggcctaaagtgggaagattgtttcctcttcagtttgtttccaatcagctatctcttgcttgtaacaatgttttgaattcttatgaggactggcatagaa 17605483  T
Q  271 aattgggtcatataaactttgttgtttt 298  Q
    |||||||||||  ||||| |||||||||    
T  17605482 aattgggtcatccaaactctgttgtttt 17605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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