View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0802_low_15 (Length: 449)
Name: NF0802_low_15
Description: NF0802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0802_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 34953087 - 34953288
Alignment:
| Q |
16 |
atacaacattattgtgcctacaattttaatttcnnnnnnnnnnnngttaattaataatggaatgaactgaaatctaacctgataacttcaacaacaatat |
115 |
Q |
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| T |
34953087 |
atacaacattattgtgcctacaattttaattt--tttttttttttgttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatat |
34953184 |
T |
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| Q |
116 |
tcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcacactagaatgatgaatatgactaaataggagacttgagaaaatat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34953185 |
tcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcatactagaatgatgaatatgactaaataggagagttgagaaaatat |
34953284 |
T |
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| Q |
216 |
caaa |
219 |
Q |
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|||| |
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| T |
34953285 |
caaa |
34953288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 34971839 - 34971997
Alignment:
| Q |
61 |
gttaattaataatggaatgaactgaaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctct |
160 |
Q |
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|||||| ||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34971839 |
gttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctct |
34971938 |
T |
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| Q |
161 |
cagttatgcacactagaatgatgaatatgactaaataggagacttgagaaaatatcaaa |
219 |
Q |
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| T |
34971939 |
cagttatgcacactagaatgatgaatatgactaaataggagagttgagaaaatatcaaa |
34971997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 277 - 400
Target Start/End: Original strand, 34953346 - 34953469
Alignment:
| Q |
277 |
ccatcatatttcaatgggaggaatgaggtgtaaggaggaaggtacctaaccacgagtacaaattaaagcaagtaaatatcaatggttatttatttttatt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34953346 |
ccatcatatttcaatgggaggaatgaggtgtaaggaggaaggtacctaaccacgagtacaaattaaagcaagtaaatatcaatggttatttatttttatt |
34953445 |
T |
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| Q |
377 |
gatgaacaatcttagtacactttt |
400 |
Q |
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|||||||||||||||||||||||| |
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| T |
34953446 |
gatgaacaatcttagtacactttt |
34953469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 35032698 - 35032810
Alignment:
| Q |
85 |
aaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctctcagttatgcacactagaatgatga |
184 |
Q |
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||||||||||||| |||||||||| ||||||| || || |||||||| || ||||| |||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
35032698 |
aaatctaacctgacaacttcaacagcaatattgaagacattgaaattgagtggatcgtccttcaattgtttcctctcagttatgcaaactagtatgatga |
35032797 |
T |
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| Q |
185 |
atatgactaaata |
197 |
Q |
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| ||||||||||| |
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| T |
35032798 |
aaatgactaaata |
35032810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 34972063 - 34972101
Alignment:
| Q |
285 |
tttcaatgggaggaatgaggtgtaaggaggaaggtacct |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34972063 |
tttcaatgggaggaatgaggtgtaaggaggaaggtacct |
34972101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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